Revision [3614]

Last edited on 2011-05-31 20:04:01 by BenoitAudouard [revert]
Additions:
http://www.swox.com/gmp/ (LGPL) GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. There is no practical limit to the precision except the ones implied by the available memory in the machine GMP runs on. GMP has a rich set of functions, and the functions have a regular interface.
TestScilab non-free license (non-commercial) tool for many scientific problems
Deletions:
http://www.swox.com/gmp/ (LGPL) GMP is a free library for arbitrary precision [[http://www.OutdoorFountains.com outdoor fountains]] arithmetic, operating on signed integers, rational numbers, and floating point numbers. There is no practical limit to the precision except the ones implied by the available memory in the machine GMP runs on. GMP has a rich set of functions, and the functions have a regular interface.
TestScilab non-free license (non-commercial) tool for many scientific problems [[http://www.diamondlinks.net link building service]]


Revision [3612]

Edited on 2011-05-25 10:56:03 by SimonAtkins [revert]
Additions:
http://www.swox.com/gmp/ (LGPL) GMP is a free library for arbitrary precision [[http://www.OutdoorFountains.com outdoor fountains]] arithmetic, operating on signed integers, rational numbers, and floating point numbers. There is no practical limit to the precision except the ones implied by the available memory in the machine GMP runs on. GMP has a rich set of functions, and the functions have a regular interface.
Deletions:
http://www.swox.com/gmp/ (LGPL) GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. There is no practical limit to the precision except the ones implied by the available memory in the machine GMP runs on. GMP has a rich set of functions, and the functions have a regular interface.


Revision [3609]

Edited on 2011-05-18 12:15:44 by JohnJones [minor edit]
Additions:
TestScilab non-free license (non-commercial) tool for many scientific problems [[http://www.diamondlinks.net link building service]]
Deletions:
TestScilab non-free license (non-commercial) tool for many scientific problems


Revision [3168]

Edited on 2010-08-24 17:04:00 by BenoitAudouard [minor edit]
Additions:
http://archimedes.iv.org.br/portal/project/archimedes-project/ - [[http://archimedes.iv.org.br/portal/screenshots-2 screenshots]] computer-aided design software focused on architecture
http://wiki.debian.org/DebianScience programs in debian (or not)
Deletions:
http://wiki.debian.org/DebianScienceDataPlotting plot programs in debian (or not)


Revision [2843]

Edited on 2009-12-14 11:04:02 by BenoitAudouard [precision]
Additions:
http://itmanagement.earthweb.com/entdev/article.php/3701421 The 7 Most Influential GNU/Linux Distribution Guide
Deletions:
http://itmanagement.earthweb.com/entdev/article.php/3701421 (The 7 Most Influential GNU/Linux Distribution Guide for [[http://www.superiorpapers.com/ essay writers]] which says that "GNU/Linux offers a bewildering variety of flavors -- or distributions, as they're called. To a newcomer's eyes, such as an essay writerslike , many of these seem virtually identical to each other."
Yet, the more you learn about a distribution and the community that surrounds it, the more different they become.


Revision [2842]

Edited on 2009-12-11 07:27:00 by LaciBraxton [precision]
Additions:
http://itmanagement.earthweb.com/entdev/article.php/3701421 (The 7 Most Influential GNU/Linux Distribution Guide for [[http://www.superiorpapers.com/ essay writers]] which says that "GNU/Linux offers a bewildering variety of flavors -- or distributions, as they're called. To a newcomer's eyes, such as an essay writerslike , many of these seem virtually identical to each other."
Yet, the more you learn about a distribution and the community that surrounds it, the more different they become.


Revision [2765]

Edited on 2009-10-23 10:23:03 by AkishaHoftman [precision]
Additions:
To be sorted : http://wiki.eagle-usb.org/wakka.php?wiki=LogicielsScientifiques existing packages are described (I miss the snapshots)
Deletions:
: http://wiki.eagle-usb.org/wakka.php?wiki=LogicielsScientifiques existing packages are described (I miss the snapshots)


Revision [2764]

Edited on 2009-10-23 10:22:47 by AkishaHoftman [precision]
Additions:
: http://wiki.eagle-usb.org/wakka.php?wiki=LogicielsScientifiques existing packages are described (I miss the snapshots)
Deletions:
To be sorted : http://wiki.eagle-usb.org/wakka.php?wiki=LogicielsScientifiques existing packages are described (I miss the snapshots)


Revision [2542]

Edited on 2009-03-04 11:03:19 by BenoitAudouard [add gcalc]
Additions:
http://gcalc.net/ (GPL) [ [[http://gcalc.net/screenshots.php screenshots]] ] set of graphing functionality for algebra, pre-calculus, calculus and beyond. (Java)


Revision [1831]

Edited on 2008-02-03 03:29:20 by BenoitAudouard [ajout libre-apps]
Additions:
http://www.libres-apps.org/index.php?tags=scientifique [fr] annuaire logiciels scientifiques
Deletions:


Revision [1830]

Edited on 2008-02-03 03:15:31 by BenoitAudouard [add sal mirror]
Additions:
http://sal.jyu.fi/index.shtml [en] a mirror just in case other sites are down for SAL


Revision [1718]

Edited on 2007-12-11 22:53:03 by BenoitAudouard [add sal mirror]
Additions:
http://fr.wikipedia.org/wiki/Programmes_GNU-Linux_d'astronomie


Revision [1622]

Edited on 2007-10-13 19:17:54 by BenoitAudouard [add sal mirror]
Additions:
http://franck.fresnel.free.fr/ATNT/Presentation.php (GPL) Acquisition et traitement numérique (java)
http://adullact.net/projects/atn/


Revision [1561]

Edited on 2007-09-06 02:56:59 by BenoitAudouard [add sal mirror]
Additions:
http://sourceforge.net/projects/octaviz/ (GPL) [ [[http://octaviz.sourceforge.net/index.php?page=screen screenshots]] ] ""Octaviz is a visualization system for Octave. It is a wrapper that makes all VTK classes accessible from within Octave using the same object-oriented syntax as in C++ or Python. Octaviz also provides high-level functions for 2D and 3D visualization. Using those functions, most common visualization tasks (3D surface plots, contour plots, meshes etc) can be accomplished without any knowledge about VTK.""
Deletions:
http://sourceforge.net/projects/octaviz/ (GPL) [ [[http://octaviz.sourceforge.net/index.php?page=screen screenshots]] ] Octaviz is a visualization system for Octave. It is a wrapper that makes all VTK classes accessible from within Octave using the same object-oriented syntax as in C++ or Python. Octaviz also provides high-level functions for 2D and 3D visualization. Using those functions, most common visualization tasks (3D surface plots, contour plots, meshes etc) can be accomplished without any knowledge about VTK.


Revision [1560]

Edited on 2007-09-06 02:56:39 by BenoitAudouard [add sal mirror]
Additions:
http://sourceforge.net/projects/octaviz/ (GPL) [ [[http://octaviz.sourceforge.net/index.php?page=screen screenshots]] ] Octaviz is a visualization system for Octave. It is a wrapper that makes all VTK classes accessible from within Octave using the same object-oriented syntax as in C++ or Python. Octaviz also provides high-level functions for 2D and 3D visualization. Using those functions, most common visualization tasks (3D surface plots, contour plots, meshes etc) can be accomplished without any knowledge about VTK.


Revision [1559]

Edited on 2007-09-06 01:51:02 by BenoitAudouard [add sal mirror]
Additions:
http://freshmeat.net/projects/radarfdtd/ (GPL) a program to simulate electromagnetic waves propagating through various materials (the author used it mainly for Ground Penetrating Radar (GPR) applications, but it is not limited to this). Using generalized perfectly matched layers (GPML) as an absorbing boundary condition
http://alioth.debian.org/projects/tessa/ (GPL) Tessa is a three-dimensional simulation software for optical systems, based on the FDTD method. It is believed to be terribly efficient. Tessa was developed in the LEOM laboratory, École centrale de Lyon: http://leom.ec-lyon.fr/


Revision [1558]

Edited on 2007-09-06 01:44:01 by BenoitAudouard [add sal mirror]
Additions:
http://people.web.psi.ch/geus/pyfemax/index.html [ [[http://people.web.psi.ch/geus/pyfemax/screenshots.html screenshots]] ] PySparse extends the Python interpreter by a set of sparse matrix types holding double precision values. PyFemax is a set of Python modules which allow to compute eigensolutions of the time-harmonic Maxwell equations
~-http://sourceforge.net/projects/pysparse/ (BSD) A Sparse Matrix Library for Python


Revision [1557]

Edited on 2007-09-06 01:39:19 by BenoitAudouard [add sal mirror]
Additions:
http://ab-initio.mit.edu/wiki/index.php/Meep (GPL) free finite-difference time-domain (FDTD) simulation software package developed at MIT to model electromagnetic systems, along with our MPB eigenmode package


Revision [1550]

Edited on 2007-08-27 13:23:47 by BenoitAudouard [add sal mirror]
Additions:
http://www.paipix.org/tikiwiki/tiki-read_article.php?articleId=47 AIPIX scientific live-DVD (based on Debian)


Revision [1446]

Edited on 2007-07-09 02:25:52 by BenoitAudouard [spam]
Additions:
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=232&catid=2 [en] many suggestions of programs, being sorted
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=218&catid=2 [en] some have been included
see CAELinuxSuggestions
https://www.scientificlinux.org/ distribution for scientific use, based on RHEL4
https://www.scientificlinux.org/distributions/4x/40/sl.release.note.40.i386 not much added :/ (openafs, mp3, ...) at least it permit to have a standard base
===presentation of products===
http://ceu.fi.udc.es/SAL/index.shtml SAL (Scientific Applications on Linux) is a collection of information and links to software that will be of interest to scientists and engineers. The broad coverage of Linux applications will also benefit the whole Linux/Unix community. There are currently 2,965 entries in SAL
http://ceu.fi.udc.es/SAL/B/index.shtml [en] list of Numerical Analysis programs
http://ceu.fi.udc.es/SAL/Z/2/index.shtml [en] list of chemical/biological software
http://savannah.fzk.de/ a german forge with scientific software (using grid)

http://www.gnu.org/software/gsl/ to be checked : programs based on gnu scientific library (maybe not all are packaged ?)
http://wiki.debian.org/DebianScienceDataPlotting plot programs in debian (or not)
http://zaimi.free.fr/informatique/ [fr] list of many programs
http://82.231.148.189/dokuwiki/doku.php?id=doc:veille:ingenierie [fr]
http://www-math.univ-fcomte.fr/pp_Annu/DCALUGARU/liens.php [fr]
http://ubunpingoo.tuxfamily.org/doku.php?id=installation_rapide_de_logiciels_utilisables_en_milieu_educatif [fr] many programs for science
http://www.aiaa-houston.org/newsletter/jan06/jan06.pdf [en] review of astronautics with octave, maxima, flight gear, ""IT++"", ode, openscenegraph
http://www.archilinux.org/archi-cao/archi-cao.html [fr] some programs either free or non-free for CAD, import autocad files in blender
http://www.tech-edv.co.at/lunix/CADlinks.html [en] table identifying CAD software for Linux with license type / source code provided / binary packages
http://www.tech-edv.co.at/lunix/UTILlinks.html [en] CAD/3d Utilities Links
http://www.tech-edv.co.at/lunix/MODlinks.html [en] Linux Modelers Links
http://www.evl.uic.edu/cavern/sage/applications.php Scalable Adaptive Graphics Environment (to be checked)
http://www.librecours.org/cgi-bin/main?callback=presentation [fr]
https://lipforge.ens-lyon.fr/softwaremap/trove_list.php
http://gforge.inria.fr/softwaremap/trove_list.php
http://www.inria.fr/valorisation/logiciels/calcul.fr.html
http://norma.mas.ecp.fr/wikimas/ScientificComputingSoftware [en] lots of sofware, some with a F/OSS license
http://www.loria.fr/software/tous?license=free&theme=all&search_string= [fr] list of sofware with free license
http://www.csc.fi/suomi/hakemisto/sovelluslista/ohjelmistot.html.en [en] Application software and databases at CSC (check what is free)
http://sw-tools.pdb.org/apps/MAXIT/index.html maxit Program Suite was developed by the PDB (Protein Data Bank) and NDB (Nucleic Acid Database) to assist in the processing and curation of macromolecular structure data
http://gersoo.free.fr/calsci/calsci1.html [fr] long list of products (either free software or sometimes not)
http://techer.pascal.free.fr/postgis/ [fr] geographic information systems (postgres with spatial options)
http://freshmeat.net/projects/aisee/ Free for non-commercial use graph browser which supports 15 layout algorithms, recursive graph nesting and easy printing
http://freshmeat.net/projects/siptoolbox/ scigraphica
http://luke.no-ip.org/code/ [en] many programs, some about fractals or open GL...
http://luke.no-ip.org/code/kueye/

http://g3d-cpp.sourceforge.net/ commercial-grade 3D Engine available as Open Source (BSD License). It is used in games, tech demos, research papers, military simulators, and university courses. It can support real-time rendering, off-line rendering, back-end game server management of 3D worlds, and use of graphics hardware for general purpose computing.
http://freshmeat.net/browse/97/
http://freshmeat.net/projects/ghemical/ A molecular modelling package with GUI and 3D-visualization tools.
http://freshmeat.net/projects/gmsh/ A 3D finite element mesh generator with built-in CAD engine and post-processor.
http://freshmeat.net/projects/visit/ Software for scientific visualization and analysis.
http://www.mathtools.net/ [en] many programs, most of them proprietary after a quick glance :-(
http://sourceforge.net/projects/elisa an open ""C++"" library for constraint programming and constraint solving techniques (requires gaol)
http://sourceforge.net/projects/gaol ""C++"" library for interval arithmetic (RPMs are available - requires IBM mathlib)
===List of existing packages or programs===
Those are lists of programs for GNU/Linux, which may be already packaged.
http://club.mandriva.com/xwiki/bin/KB/SciApps
http://rpms.mandrivaclub.com/rpms/Groups.html see http://rpms.mandrivaclub.com/rpms/Sciences_Mathematics.html and others in Sciences/you name it...
http://packages.ubuntu.com/breezy/math/
http://www.freshports.org/math/ ports for ""FreeBSD""
http://www.biolinux.org/soft.html rpm packages for biology => verify whether they are in plf or contrib
http://www.usinglinux.org/science/
http://www.jesuislibre.org/applications/Scientifique_et_Technique/ [fr] many programs to verify
http://repos.opensuse.org/science/SUSE_Factory/repodata/ a repository dedicated to Software for Scientists and Engineers (SUSE_Factory)
http://www.eso.org/science/scisoft/ packaging of astronomical software
http://www.eso.org/science/scisoft/rpm2html/Applications_Scientific.html
===Programs with packages available===
Those programs could be included either in main or in contrib, only need a maintainer and adaptation of spec file
http://calculix.de/ (GPL) Three-Dimensional Structural Finite Element Program
http://www.dhondt.de/ to download calculix
http://www.colorfullife.com/~manfred/ccx/ rpm are available
see TestCalculix
http://sourceforge.net/projects/apbs - [ [[http://sourceforge.net/project/screenshots.php?group_id=148472 screenshots]] ] (GPL) software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales
http://sourceforge.net/project/showfiles.php?group_id=148472 rpm are available
see CompileApbs
verify if this is obsoleted by what provides apbs...
http://www.fetk.org/ ""The Finite Element ToolKit (FEtk)"" is an evolving collection of parallel adaptive multilevel finite element software libraries and tools for solving coupled systems of partial differential equations (PDE) and integral equations (IE)
http://cam.ucsd.edu/~mholst/codes/maloc/index.html (GPL) MALOC (Minimal Abstraction Layer for Object-oriented C) is a small, portable, abstract C environment library for object-oriented C programming
http://cam.ucsd.edu/~mholst/codes/maloc/index.html#download rpm are available
http://cam.ucsd.edu/~mholst/codes/mc/index.html hum missing the downloading links :-(
http://cam.ucsd.edu/~mholst/codes/sg/index.html (GPL) SG is an unstructured simplex mesh OpenGL display and manipulation tool for use with the finite element research codes MC and PLTMG
http://cam.ucsd.edu/~mholst/codes/sg/index.html#download rpm are available
verify if this is obsoleted by what provides apbs...
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html (GPL) ""calcul formel, de la géométrie dynamique, du tableur et de la programmation. Xcas est une interface de Giac, une bibliothèque C++ de calcul formel libre (licence GPL). Giac dispose d'un mode de compatibilité avec les logiciels Maple et MuPAD et les calculatrices TI89/TI92/Voyage 200""
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html#packages debian packages available
http://www.math.u-bordeaux.fr/~belabas/pari/ PARI/GP computer algebra system designed for fast computations in number theory (factorizations, algebraic number theory, elliptic curves...)
http://modular.fas.harvard.edu/SAGE/ a graphical interface
===Programs not yet packaged===
Have a look at those programs, check license and whether packages (deb, rpm, ...) would be available
http://www2.enel.ucalgary.ca/~vigmond/flounder/ - Flounder is a quick way to visualize regularly spaced 4D data, i.e., a data set that is a function of x, y, z, and time.
http://cocoa.dima.unige.it/ (public domain) Computations in Commutative Algebra
http://www.gap-system.org (GPL) GAP is a system for computational discrete algebra, with particular emphasis on Computational Group Theory.
http://home.gna.org/mipisti/ (GPL) ""MicroscopePictureStitching (MiPiSti)"" arrange charts to one overall picture
https://gna.org/projects/mipisti project page
https://gna.org/projects/mini3d/ (GPL) mini3d is a set of basic tools for exporting/importing 3d mesh. This lib provide read/write 3d mesh in 3ds ascii format (.asc)
https://gna.org/projects/micromodel/ (GPL) ""This MicroModel library is about modeling low polycount 3d models. A visual mouse driven modeler is featured to help building models.""
http://cvs.gna.org/cvsweb/?cvsroot=micromodel cvs
https://gna.org/projects/metafract/ (GPL) Metafract is an all-purpose fractal generator using GTK+2.
http://svn.gna.org/viewcvs/metafract/trunk/ svn
http://www.decade-dynamics.org/ (GPL) Decade is an acronym for Dynamic Engine for Computer Aided DEsign software. It aims to provide a full dynamic engine for simulating rigid body. Decade can work as a standalone tool, as well as an extension for CATIA V5 and SolidWorks CAD softwares.
https://gna.org/projects/decade/ project page
http://download.gna.org/decade/ download
https://gna.org/projects/haplo/ (GPL) a finite element program
http://download.gna.org/haplo/debian/ debian packages
http://www.swox.com/gmp/ (LGPL) GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. There is no practical limit to the precision except the ones implied by the available memory in the machine GMP runs on. GMP has a rich set of functions, and the functions have a regular interface.
http://www.opencfd.co.uk/ (GPL) computational fluid dynamics (CFD) Open FOAM (Open Field Operation and Manipulation) CFD Toolbox can simulate anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics, electromagnetics and the pricing of financial options
http://freshmeat.net/projects/openfoam/ license : GPL
http://gfs.sourceforge.net/ - [ [[http://gfs.sourceforge.net/gallery.html screenshots]] ] (GPL) library for the solution of the partial differential equations describing fluid flow
http://www.geuz.org/getdp/ (GPL) ""GetDP"" has been initially developed in the field of computational electromagnetics, general finite element solver using mixed elements to discretize de Rham-type complexes in one, two and three dimensions
http://www.geuz.org/gmsh/ - [ [[http://www.geuz.org/gmsh/#Screenshots screenshots]] ] (GPL) Gmsh is a three-dimensional finite element mesh generator with built-in pre- and post-processing facilities
http://www.hpfem.jku.at/netgen/index.html - [ [[http://www.hpfem.jku.at/netgen/index.html?/netgen/screenshots.html screenshots]] ] (LGPL) Netgen is an automatic 3d tetrahedral mesh generator
http://www.hpfem.jku.at/ngsolve/index.html (LGPL) NGSolve is a general purpose 3D finite element solver. Version 1.x supports scalar (heat flow), elasticity and magnetic field problems.
http://www.opencascade.org/ - [ [[http://www.opencascade.org/showroom/screenshots/ screenshots]] ] ([[http://www.opencascade.org/occ/license/ LGPL-like]]) Open CASCADE is a powerful CAD/CAM/CAE kernel and development platform for 3D modeling applications
http://www.mit.edu/~ibaran/kseg.html [en] GPL Geometry
http://www.stat.umn.edu/macanova/macanova.home.html [en] GPL interactive statistical analysis program
http://socnetv.sourceforge.net/ [en] GPL comprehensive Social Networks Analysis and Visualisation
http://eye.jimbomania.com/eyefract.html [en] maybe-GPL
http://jimbomania.com/glfract.html [en] GPL loads fractal {Mandelbrot, Julia} sets from file as specified by David Eyerman's Eyefract v0.6.0 and displays them in 3D space with ""OpenGL/Glut""
http://spike.sandia.gov/Trilinos/about.html Project Trilinos effort to develop and implement robust parallel algorithms using modern object-oriented software design, while still leveraging the value of established numerical libraries such as PETSc, Aztec, the BLAS and LAPACK.
http://www.ap-i.net/skychart/modules.php?op=modload&name=PagEd&file=index&page_id=18 [fr] cartes du ciel (skychart), compiles with lazarus free pascal
http://www.wings3d.com/index.php [en] Wings 3D is a subdivision modeler BSD, developed in erlang :-(
http://home.fnal.gov/~gnedin/IFRIT/ - [ [[http://home.fnal.gov/~gnedin/IFRIT/intro_shots.html screenshots]] ] (Public Domain) powerful tool that can be used to visualize 3-dimensional data sets
http://www.ncnr.nist.gov/xtal/software/gsas.html (BSD-like) GSAS (General Structure Analysis System) is a comprehensive system for the refinement of structural models to both x-ray and neutron diffraction data. The GSAS package can be used with both single-crystal and powder diffraction data (Rietveld analysis) -- TagScara
http://www.ncnr.nist.gov/programs/crystallography/software/expgui/expgui.html Public Domain tcl/tk EXPGUI is a GUI for GSAS
http://jsynoptic.sourceforge.net/ (LGPL) JSynoptic renders information graphically. It can be used as a simple graph plotter, or as a complex run-time monitoring environment
http://jsynoptic.sourceforge.net/screenshots.html
http://sourceforge.net/projects/jsynoptic/ Java
http://jcae.sourceforge.net/ (LGPL) # simple volumes modeler # finite elements mesher # portable on platforms which support Java and Opencascade
http://jcae.sourceforge.net/screenshots.html
http://www.sourceforge.net/projects/jcae Java
http://consult.cern.ch/writeup/garfield/files/ (no license found) Garfield is a computer program for the detailed simulation of two- and three-dimensional drift chambers.
===software that seems not free===
to be looked at later... even though they seem open source (OSI) approved. Non-commercial is a severe restriction :-(
http://femm.foster-miller.net/index.html A Windows finite element solver for 2D and axisymmetric magnetic and electrostatic problems with graphical pre- and post-processors.
http://femm.foster-miller.net/Archives/license.htm not a free license (cannot charge)
http://femm.foster-miller.net/Archives/linux/readme.htm runs in wine :-(
http://www.dealii.org/ - [[http://www.dealii.org/developer/license.html QPL licensing]] The main aim of deal.II is to enable development of modern finite element algorithms, using among other aspects sophisticated error estimators and adaptive meshes.
http://www.informatik.tu-darmstadt.de/TI/LiDIA/ - [[ftp://ftp.informatik.tu-darmstadt.de/pub/TI/systems/LiDIA/current/COPYING non-commercial license]] A ""C++"" Library For Computational Number Theory
http://www.ill.fr/pages/science/IGroups/diff/Soft/fp/index.html - [[ license to be found]] ""a set of crystallographic programs (FullProf, WinPLOTR, EdPCR, GFourier, etc...) mainly developed for Rietveld analysis (structure profile refinement) of neutron (constant wavelength, time of flight, nuclear and magnetic scattering) or X-ray powder diffraction data collected at constant or variable step in scattering angle 2theta."" -- TagScara
http://www-llb.cea.fr/fullweb/fp2k/fp2k_intro_whatis.htm brief presentation
http://www.ill.fr/pages/science/IGroups/diff/Soft/fp/php/downloads.html (last version when checked : June 2006)
http://www-llb.cea.fr/fullweb/fp2k/fp2k.htm (dates back to january 2003 ?)
http://www-llb.cea.fr/fullweb/others/jfullprof.htm jfullprof (java interface)
===Compilations of programs===
for programs that have not yet been packaged and that I try to get compiled see CompilePrograms
CompileElmer GPL tool using finite element method for multi-physics problems (compiles with g95 fortran ""gcc-c++"" ...)
TestCalculix GPL tool
TestScilab non-free license (non-commercial) tool for many scientific problems
===For Scara===
http://openscientist.lal.in2p3.fr/
http://wikiomics.org/wiki/Main_Page
http://www.openscience.org/links/index.php?section=21
http://pgopher.chm.bris.ac.uk/
http://www.steletch.org/spip.php?rubrique4
http://fsffrance.org/science/chimie.fr.html
http://www.alchem.org/
http://www.alchem.org/list.php3?id_rubrique=2 [fr] list of software
----
CategoryCookerDev
Deletions:
http://www.caelinux.com/CMS/index.php?option=com_simpleboard


Revision [1445]

Edited on 2007-07-09 01:03:24 by HcfD4j [spam]
Additions:
http://www.caelinux.com/CMS/index.php?option=com_simpleboard
Deletions:
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=232&catid=2 [en] many suggestions of programs, being sorted
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=218&catid=2 [en] some have been included
see CAELinuxSuggestions
https://www.scientificlinux.org/ distribution for scientific use, based on RHEL4
https://www.scientificlinux.org/distributions/4x/40/sl.release.note.40.i386 not much added :/ (openafs, mp3, ...) at least it permit to have a standard base
===presentation of products===
http://ceu.fi.udc.es/SAL/index.shtml SAL (Scientific Applications on Linux) is a collection of information and links to software that will be of interest to scientists and engineers. The broad coverage of Linux applications will also benefit the whole Linux/Unix community. There are currently 2,965 entries in SAL
http://ceu.fi.udc.es/SAL/B/index.shtml [en] list of Numerical Analysis programs
http://ceu.fi.udc.es/SAL/Z/2/index.shtml [en] list of chemical/biological software
http://savannah.fzk.de/ a german forge with scientific software (using grid)

http://www.gnu.org/software/gsl/ to be checked : programs based on gnu scientific library (maybe not all are packaged ?)
http://wiki.debian.org/DebianScienceDataPlotting plot programs in debian (or not)
http://zaimi.free.fr/informatique/ [fr] list of many programs
http://82.231.148.189/dokuwiki/doku.php?id=doc:veille:ingenierie [fr]
http://www-math.univ-fcomte.fr/pp_Annu/DCALUGARU/liens.php [fr]
http://ubunpingoo.tuxfamily.org/doku.php?id=installation_rapide_de_logiciels_utilisables_en_milieu_educatif [fr] many programs for science
http://www.aiaa-houston.org/newsletter/jan06/jan06.pdf [en] review of astronautics with octave, maxima, flight gear, ""IT++"", ode, openscenegraph
http://www.archilinux.org/archi-cao/archi-cao.html [fr] some programs either free or non-free for CAD, import autocad files in blender
http://www.tech-edv.co.at/lunix/CADlinks.html [en] table identifying CAD software for Linux with license type / source code provided / binary packages
http://www.tech-edv.co.at/lunix/UTILlinks.html [en] CAD/3d Utilities Links
http://www.tech-edv.co.at/lunix/MODlinks.html [en] Linux Modelers Links
http://www.evl.uic.edu/cavern/sage/applications.php Scalable Adaptive Graphics Environment (to be checked)
http://www.librecours.org/cgi-bin/main?callback=presentation [fr]
https://lipforge.ens-lyon.fr/softwaremap/trove_list.php
http://gforge.inria.fr/softwaremap/trove_list.php
http://www.inria.fr/valorisation/logiciels/calcul.fr.html
http://norma.mas.ecp.fr/wikimas/ScientificComputingSoftware [en] lots of sofware, some with a F/OSS license
http://www.loria.fr/software/tous?license=free&theme=all&search_string= [fr] list of sofware with free license
http://www.csc.fi/suomi/hakemisto/sovelluslista/ohjelmistot.html.en [en] Application software and databases at CSC (check what is free)
http://sw-tools.pdb.org/apps/MAXIT/index.html maxit Program Suite was developed by the PDB (Protein Data Bank) and NDB (Nucleic Acid Database) to assist in the processing and curation of macromolecular structure data
http://gersoo.free.fr/calsci/calsci1.html [fr] long list of products (either free software or sometimes not)
http://techer.pascal.free.fr/postgis/ [fr] geographic information systems (postgres with spatial options)
http://freshmeat.net/projects/aisee/ Free for non-commercial use graph browser which supports 15 layout algorithms, recursive graph nesting and easy printing
http://freshmeat.net/projects/siptoolbox/ scigraphica
http://luke.no-ip.org/code/ [en] many programs, some about fractals or open GL...
http://luke.no-ip.org/code/kueye/

http://g3d-cpp.sourceforge.net/ commercial-grade 3D Engine available as Open Source (BSD License). It is used in games, tech demos, research papers, military simulators, and university courses. It can support real-time rendering, off-line rendering, back-end game server management of 3D worlds, and use of graphics hardware for general purpose computing.
http://freshmeat.net/browse/97/
http://freshmeat.net/projects/ghemical/ A molecular modelling package with GUI and 3D-visualization tools.
http://freshmeat.net/projects/gmsh/ A 3D finite element mesh generator with built-in CAD engine and post-processor.
http://freshmeat.net/projects/visit/ Software for scientific visualization and analysis.
http://www.mathtools.net/ [en] many programs, most of them proprietary after a quick glance :-(
http://sourceforge.net/projects/elisa an open ""C++"" library for constraint programming and constraint solving techniques (requires gaol)
http://sourceforge.net/projects/gaol ""C++"" library for interval arithmetic (RPMs are available - requires IBM mathlib)
===List of existing packages or programs===
Those are lists of programs for GNU/Linux, which may be already packaged.
http://club.mandriva.com/xwiki/bin/KB/SciApps
http://rpms.mandrivaclub.com/rpms/Groups.html see http://rpms.mandrivaclub.com/rpms/Sciences_Mathematics.html and others in Sciences/you name it...
http://packages.ubuntu.com/breezy/math/
http://www.freshports.org/math/ ports for ""FreeBSD""
http://www.biolinux.org/soft.html rpm packages for biology => verify whether they are in plf or contrib
http://www.usinglinux.org/science/
http://www.jesuislibre.org/applications/Scientifique_et_Technique/ [fr] many programs to verify
http://repos.opensuse.org/science/SUSE_Factory/repodata/ a repository dedicated to Software for Scientists and Engineers (SUSE_Factory)
http://www.eso.org/science/scisoft/ packaging of astronomical software
http://www.eso.org/science/scisoft/rpm2html/Applications_Scientific.html
===Programs with packages available===
Those programs could be included either in main or in contrib, only need a maintainer and adaptation of spec file
http://calculix.de/ (GPL) Three-Dimensional Structural Finite Element Program
http://www.dhondt.de/ to download calculix
http://www.colorfullife.com/~manfred/ccx/ rpm are available
see TestCalculix
http://sourceforge.net/projects/apbs - [ [[http://sourceforge.net/project/screenshots.php?group_id=148472 screenshots]] ] (GPL) software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales
http://sourceforge.net/project/showfiles.php?group_id=148472 rpm are available
see CompileApbs
verify if this is obsoleted by what provides apbs...
http://www.fetk.org/ ""The Finite Element ToolKit (FEtk)"" is an evolving collection of parallel adaptive multilevel finite element software libraries and tools for solving coupled systems of partial differential equations (PDE) and integral equations (IE)
http://cam.ucsd.edu/~mholst/codes/maloc/index.html (GPL) MALOC (Minimal Abstraction Layer for Object-oriented C) is a small, portable, abstract C environment library for object-oriented C programming
http://cam.ucsd.edu/~mholst/codes/maloc/index.html#download rpm are available
http://cam.ucsd.edu/~mholst/codes/mc/index.html hum missing the downloading links :-(
http://cam.ucsd.edu/~mholst/codes/sg/index.html (GPL) SG is an unstructured simplex mesh OpenGL display and manipulation tool for use with the finite element research codes MC and PLTMG
http://cam.ucsd.edu/~mholst/codes/sg/index.html#download rpm are available
verify if this is obsoleted by what provides apbs...
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html (GPL) ""calcul formel, de la géométrie dynamique, du tableur et de la programmation. Xcas est une interface de Giac, une bibliothèque C++ de calcul formel libre (licence GPL). Giac dispose d'un mode de compatibilité avec les logiciels Maple et MuPAD et les calculatrices TI89/TI92/Voyage 200""
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html#packages debian packages available
http://www.math.u-bordeaux.fr/~belabas/pari/ PARI/GP computer algebra system designed for fast computations in number theory (factorizations, algebraic number theory, elliptic curves...)
http://modular.fas.harvard.edu/SAGE/ a graphical interface
===Programs not yet packaged===
Have a look at those programs, check license and whether packages (deb, rpm, ...) would be available
http://www2.enel.ucalgary.ca/~vigmond/flounder/ - Flounder is a quick way to visualize regularly spaced 4D data, i.e., a data set that is a function of x, y, z, and time.
http://cocoa.dima.unige.it/ (public domain) Computations in Commutative Algebra
http://www.gap-system.org (GPL) GAP is a system for computational discrete algebra, with particular emphasis on Computational Group Theory.
http://home.gna.org/mipisti/ (GPL) ""MicroscopePictureStitching (MiPiSti)"" arrange charts to one overall picture
https://gna.org/projects/mipisti project page
https://gna.org/projects/mini3d/ (GPL) mini3d is a set of basic tools for exporting/importing 3d mesh. This lib provide read/write 3d mesh in 3ds ascii format (.asc)
https://gna.org/projects/micromodel/ (GPL) ""This MicroModel library is about modeling low polycount 3d models. A visual mouse driven modeler is featured to help building models.""
http://cvs.gna.org/cvsweb/?cvsroot=micromodel cvs
https://gna.org/projects/metafract/ (GPL) Metafract is an all-purpose fractal generator using GTK+2.
http://svn.gna.org/viewcvs/metafract/trunk/ svn
http://www.decade-dynamics.org/ (GPL) Decade is an acronym for Dynamic Engine for Computer Aided DEsign software. It aims to provide a full dynamic engine for simulating rigid body. Decade can work as a standalone tool, as well as an extension for CATIA V5 and SolidWorks CAD softwares.
https://gna.org/projects/decade/ project page
http://download.gna.org/decade/ download
https://gna.org/projects/haplo/ (GPL) a finite element program
http://download.gna.org/haplo/debian/ debian packages
http://www.swox.com/gmp/ (LGPL) GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. There is no practical limit to the precision except the ones implied by the available memory in the machine GMP runs on. GMP has a rich set of functions, and the functions have a regular interface.
http://www.opencfd.co.uk/ (GPL) computational fluid dynamics (CFD) Open FOAM (Open Field Operation and Manipulation) CFD Toolbox can simulate anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics, electromagnetics and the pricing of financial options
http://freshmeat.net/projects/openfoam/ license : GPL
http://gfs.sourceforge.net/ - [ [[http://gfs.sourceforge.net/gallery.html screenshots]] ] (GPL) library for the solution of the partial differential equations describing fluid flow
http://www.geuz.org/getdp/ (GPL) ""GetDP"" has been initially developed in the field of computational electromagnetics, general finite element solver using mixed elements to discretize de Rham-type complexes in one, two and three dimensions
http://www.geuz.org/gmsh/ - [ [[http://www.geuz.org/gmsh/#Screenshots screenshots]] ] (GPL) Gmsh is a three-dimensional finite element mesh generator with built-in pre- and post-processing facilities
http://www.hpfem.jku.at/netgen/index.html - [ [[http://www.hpfem.jku.at/netgen/index.html?/netgen/screenshots.html screenshots]] ] (LGPL) Netgen is an automatic 3d tetrahedral mesh generator
http://www.hpfem.jku.at/ngsolve/index.html (LGPL) NGSolve is a general purpose 3D finite element solver. Version 1.x supports scalar (heat flow), elasticity and magnetic field problems.
http://www.opencascade.org/ - [ [[http://www.opencascade.org/showroom/screenshots/ screenshots]] ] ([[http://www.opencascade.org/occ/license/ LGPL-like]]) Open CASCADE is a powerful CAD/CAM/CAE kernel and development platform for 3D modeling applications
http://www.mit.edu/~ibaran/kseg.html [en] GPL Geometry
http://www.stat.umn.edu/macanova/macanova.home.html [en] GPL interactive statistical analysis program
http://socnetv.sourceforge.net/ [en] GPL comprehensive Social Networks Analysis and Visualisation
http://eye.jimbomania.com/eyefract.html [en] maybe-GPL
http://jimbomania.com/glfract.html [en] GPL loads fractal {Mandelbrot, Julia} sets from file as specified by David Eyerman's Eyefract v0.6.0 and displays them in 3D space with ""OpenGL/Glut""
http://spike.sandia.gov/Trilinos/about.html Project Trilinos effort to develop and implement robust parallel algorithms using modern object-oriented software design, while still leveraging the value of established numerical libraries such as PETSc, Aztec, the BLAS and LAPACK.
http://www.ap-i.net/skychart/modules.php?op=modload&name=PagEd&file=index&page_id=18 [fr] cartes du ciel (skychart), compiles with lazarus free pascal
http://www.wings3d.com/index.php [en] Wings 3D is a subdivision modeler BSD, developed in erlang :-(
http://home.fnal.gov/~gnedin/IFRIT/ - [ [[http://home.fnal.gov/~gnedin/IFRIT/intro_shots.html screenshots]] ] (Public Domain) powerful tool that can be used to visualize 3-dimensional data sets
http://www.ncnr.nist.gov/xtal/software/gsas.html (BSD-like) GSAS (General Structure Analysis System) is a comprehensive system for the refinement of structural models to both x-ray and neutron diffraction data. The GSAS package can be used with both single-crystal and powder diffraction data (Rietveld analysis) -- TagScara
http://www.ncnr.nist.gov/programs/crystallography/software/expgui/expgui.html Public Domain tcl/tk EXPGUI is a GUI for GSAS
http://jsynoptic.sourceforge.net/ (LGPL) JSynoptic renders information graphically. It can be used as a simple graph plotter, or as a complex run-time monitoring environment
http://jsynoptic.sourceforge.net/screenshots.html
http://sourceforge.net/projects/jsynoptic/ Java
http://jcae.sourceforge.net/ (LGPL) # simple volumes modeler # finite elements mesher # portable on platforms which support Java and Opencascade
http://jcae.sourceforge.net/screenshots.html
http://www.sourceforge.net/projects/jcae Java
http://consult.cern.ch/writeup/garfield/files/ (no license found) Garfield is a computer program for the detailed simulation of two- and three-dimensional drift chambers.
===software that seems not free===
to be looked at later... even though they seem open source (OSI) approved. Non-commercial is a severe restriction :-(
http://femm.foster-miller.net/index.html A Windows finite element solver for 2D and axisymmetric magnetic and electrostatic problems with graphical pre- and post-processors.
http://femm.foster-miller.net/Archives/license.htm not a free license (cannot charge)
http://femm.foster-miller.net/Archives/linux/readme.htm runs in wine :-(
http://www.dealii.org/ - [[http://www.dealii.org/developer/license.html QPL licensing]] The main aim of deal.II is to enable development of modern finite element algorithms, using among other aspects sophisticated error estimators and adaptive meshes.
http://www.informatik.tu-darmstadt.de/TI/LiDIA/ - [[ftp://ftp.informatik.tu-darmstadt.de/pub/TI/systems/LiDIA/current/COPYING non-commercial license]] A ""C++"" Library For Computational Number Theory
http://www.ill.fr/pages/science/IGroups/diff/Soft/fp/index.html - [[ license to be found]] ""a set of crystallographic programs (FullProf, WinPLOTR, EdPCR, GFourier, etc...) mainly developed for Rietveld analysis (structure profile refinement) of neutron (constant wavelength, time of flight, nuclear and magnetic scattering) or X-ray powder diffraction data collected at constant or variable step in scattering angle 2theta."" -- TagScara
http://www-llb.cea.fr/fullweb/fp2k/fp2k_intro_whatis.htm brief presentation
http://www.ill.fr/pages/science/IGroups/diff/Soft/fp/php/downloads.html (last version when checked : June 2006)
http://www-llb.cea.fr/fullweb/fp2k/fp2k.htm (dates back to january 2003 ?)
http://www-llb.cea.fr/fullweb/others/jfullprof.htm jfullprof (java interface)
===Compilations of programs===
for programs that have not yet been packaged and that I try to get compiled see CompilePrograms
CompileElmer GPL tool using finite element method for multi-physics problems (compiles with g95 fortran ""gcc-c++"" ...)
TestCalculix GPL tool
TestScilab non-free license (non-commercial) tool for many scientific problems
===For Scara===
http://openscientist.lal.in2p3.fr/
http://wikiomics.org/wiki/Main_Page
http://www.openscience.org/links/index.php?section=21
http://pgopher.chm.bris.ac.uk/
http://www.steletch.org/spip.php?rubrique4
http://fsffrance.org/science/chimie.fr.html
http://www.alchem.org/
http://www.alchem.org/list.php3?id_rubrique=2 [fr] list of software
----
CategoryCookerDev


Revision [1424]

Edited on 2007-07-01 21:51:29 by BenoitAudouard [spam]
Additions:
Some links I find from time to time about interesting programs
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=232&catid=2 [en] many suggestions of programs, being sorted
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=218&catid=2 [en] some have been included
see CAELinuxSuggestions
https://www.scientificlinux.org/ distribution for scientific use, based on RHEL4
https://www.scientificlinux.org/distributions/4x/40/sl.release.note.40.i386 not much added :/ (openafs, mp3, ...) at least it permit to have a standard base
===presentation of products===
http://ceu.fi.udc.es/SAL/index.shtml SAL (Scientific Applications on Linux) is a collection of information and links to software that will be of interest to scientists and engineers. The broad coverage of Linux applications will also benefit the whole Linux/Unix community. There are currently 2,965 entries in SAL
http://ceu.fi.udc.es/SAL/B/index.shtml [en] list of Numerical Analysis programs
http://ceu.fi.udc.es/SAL/Z/2/index.shtml [en] list of chemical/biological software
http://savannah.fzk.de/ a german forge with scientific software (using grid)

http://www.gnu.org/software/gsl/ to be checked : programs based on gnu scientific library (maybe not all are packaged ?)
http://wiki.debian.org/DebianScienceDataPlotting plot programs in debian (or not)
http://zaimi.free.fr/informatique/ [fr] list of many programs
http://82.231.148.189/dokuwiki/doku.php?id=doc:veille:ingenierie [fr]
http://www-math.univ-fcomte.fr/pp_Annu/DCALUGARU/liens.php [fr]
http://ubunpingoo.tuxfamily.org/doku.php?id=installation_rapide_de_logiciels_utilisables_en_milieu_educatif [fr] many programs for science
http://www.aiaa-houston.org/newsletter/jan06/jan06.pdf [en] review of astronautics with octave, maxima, flight gear, ""IT++"", ode, openscenegraph
http://www.archilinux.org/archi-cao/archi-cao.html [fr] some programs either free or non-free for CAD, import autocad files in blender
http://www.tech-edv.co.at/lunix/CADlinks.html [en] table identifying CAD software for Linux with license type / source code provided / binary packages
http://www.tech-edv.co.at/lunix/UTILlinks.html [en] CAD/3d Utilities Links
http://www.tech-edv.co.at/lunix/MODlinks.html [en] Linux Modelers Links
http://www.evl.uic.edu/cavern/sage/applications.php Scalable Adaptive Graphics Environment (to be checked)
http://www.librecours.org/cgi-bin/main?callback=presentation [fr]
https://lipforge.ens-lyon.fr/softwaremap/trove_list.php
http://gforge.inria.fr/softwaremap/trove_list.php
http://www.inria.fr/valorisation/logiciels/calcul.fr.html
http://norma.mas.ecp.fr/wikimas/ScientificComputingSoftware [en] lots of sofware, some with a F/OSS license
http://www.loria.fr/software/tous?license=free&theme=all&search_string= [fr] list of sofware with free license
http://www.csc.fi/suomi/hakemisto/sovelluslista/ohjelmistot.html.en [en] Application software and databases at CSC (check what is free)
http://sw-tools.pdb.org/apps/MAXIT/index.html maxit Program Suite was developed by the PDB (Protein Data Bank) and NDB (Nucleic Acid Database) to assist in the processing and curation of macromolecular structure data
http://gersoo.free.fr/calsci/calsci1.html [fr] long list of products (either free software or sometimes not)
http://techer.pascal.free.fr/postgis/ [fr] geographic information systems (postgres with spatial options)
http://freshmeat.net/projects/aisee/ Free for non-commercial use graph browser which supports 15 layout algorithms, recursive graph nesting and easy printing
http://freshmeat.net/projects/siptoolbox/ scigraphica
http://luke.no-ip.org/code/ [en] many programs, some about fractals or open GL...
http://luke.no-ip.org/code/kueye/

http://g3d-cpp.sourceforge.net/ commercial-grade 3D Engine available as Open Source (BSD License). It is used in games, tech demos, research papers, military simulators, and university courses. It can support real-time rendering, off-line rendering, back-end game server management of 3D worlds, and use of graphics hardware for general purpose computing.
http://freshmeat.net/browse/97/
http://freshmeat.net/projects/ghemical/ A molecular modelling package with GUI and 3D-visualization tools.
http://freshmeat.net/projects/gmsh/ A 3D finite element mesh generator with built-in CAD engine and post-processor.
http://freshmeat.net/projects/visit/ Software for scientific visualization and analysis.
http://www.mathtools.net/ [en] many programs, most of them proprietary after a quick glance :-(
http://sourceforge.net/projects/elisa an open ""C++"" library for constraint programming and constraint solving techniques (requires gaol)
http://sourceforge.net/projects/gaol ""C++"" library for interval arithmetic (RPMs are available - requires IBM mathlib)
===List of existing packages or programs===
Those are lists of programs for GNU/Linux, which may be already packaged.
http://club.mandriva.com/xwiki/bin/KB/SciApps
http://rpms.mandrivaclub.com/rpms/Groups.html see http://rpms.mandrivaclub.com/rpms/Sciences_Mathematics.html and others in Sciences/you name it...
http://packages.ubuntu.com/breezy/math/
http://www.freshports.org/math/ ports for ""FreeBSD""
http://www.biolinux.org/soft.html rpm packages for biology => verify whether they are in plf or contrib
http://www.usinglinux.org/science/
http://www.jesuislibre.org/applications/Scientifique_et_Technique/ [fr] many programs to verify
http://repos.opensuse.org/science/SUSE_Factory/repodata/ a repository dedicated to Software for Scientists and Engineers (SUSE_Factory)
http://www.eso.org/science/scisoft/ packaging of astronomical software
http://www.eso.org/science/scisoft/rpm2html/Applications_Scientific.html
===Programs with packages available===
Those programs could be included either in main or in contrib, only need a maintainer and adaptation of spec file
http://calculix.de/ (GPL) Three-Dimensional Structural Finite Element Program
http://www.dhondt.de/ to download calculix
http://www.colorfullife.com/~manfred/ccx/ rpm are available
see TestCalculix
http://sourceforge.net/projects/apbs - [ [[http://sourceforge.net/project/screenshots.php?group_id=148472 screenshots]] ] (GPL) software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales
http://sourceforge.net/project/showfiles.php?group_id=148472 rpm are available
see CompileApbs
verify if this is obsoleted by what provides apbs...
http://www.fetk.org/ ""The Finite Element ToolKit (FEtk)"" is an evolving collection of parallel adaptive multilevel finite element software libraries and tools for solving coupled systems of partial differential equations (PDE) and integral equations (IE)
http://cam.ucsd.edu/~mholst/codes/maloc/index.html (GPL) MALOC (Minimal Abstraction Layer for Object-oriented C) is a small, portable, abstract C environment library for object-oriented C programming
http://cam.ucsd.edu/~mholst/codes/maloc/index.html#download rpm are available
http://cam.ucsd.edu/~mholst/codes/mc/index.html hum missing the downloading links :-(
http://cam.ucsd.edu/~mholst/codes/sg/index.html (GPL) SG is an unstructured simplex mesh OpenGL display and manipulation tool for use with the finite element research codes MC and PLTMG
http://cam.ucsd.edu/~mholst/codes/sg/index.html#download rpm are available
verify if this is obsoleted by what provides apbs...
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html (GPL) ""calcul formel, de la géométrie dynamique, du tableur et de la programmation. Xcas est une interface de Giac, une bibliothèque C++ de calcul formel libre (licence GPL). Giac dispose d'un mode de compatibilité avec les logiciels Maple et MuPAD et les calculatrices TI89/TI92/Voyage 200""
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html#packages debian packages available
http://www.math.u-bordeaux.fr/~belabas/pari/ PARI/GP computer algebra system designed for fast computations in number theory (factorizations, algebraic number theory, elliptic curves...)
http://modular.fas.harvard.edu/SAGE/ a graphical interface
===Programs not yet packaged===
Have a look at those programs, check license and whether packages (deb, rpm, ...) would be available
http://www2.enel.ucalgary.ca/~vigmond/flounder/ - Flounder is a quick way to visualize regularly spaced 4D data, i.e., a data set that is a function of x, y, z, and time.
http://cocoa.dima.unige.it/ (public domain) Computations in Commutative Algebra
http://www.gap-system.org (GPL) GAP is a system for computational discrete algebra, with particular emphasis on Computational Group Theory.
http://home.gna.org/mipisti/ (GPL) ""MicroscopePictureStitching (MiPiSti)"" arrange charts to one overall picture
https://gna.org/projects/mipisti project page
https://gna.org/projects/mini3d/ (GPL) mini3d is a set of basic tools for exporting/importing 3d mesh. This lib provide read/write 3d mesh in 3ds ascii format (.asc)
https://gna.org/projects/micromodel/ (GPL) ""This MicroModel library is about modeling low polycount 3d models. A visual mouse driven modeler is featured to help building models.""
http://cvs.gna.org/cvsweb/?cvsroot=micromodel cvs
https://gna.org/projects/metafract/ (GPL) Metafract is an all-purpose fractal generator using GTK+2.
http://svn.gna.org/viewcvs/metafract/trunk/ svn
http://www.decade-dynamics.org/ (GPL) Decade is an acronym for Dynamic Engine for Computer Aided DEsign software. It aims to provide a full dynamic engine for simulating rigid body. Decade can work as a standalone tool, as well as an extension for CATIA V5 and SolidWorks CAD softwares.
https://gna.org/projects/decade/ project page
http://download.gna.org/decade/ download
https://gna.org/projects/haplo/ (GPL) a finite element program
http://download.gna.org/haplo/debian/ debian packages
http://www.swox.com/gmp/ (LGPL) GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. There is no practical limit to the precision except the ones implied by the available memory in the machine GMP runs on. GMP has a rich set of functions, and the functions have a regular interface.
http://www.opencfd.co.uk/ (GPL) computational fluid dynamics (CFD) Open FOAM (Open Field Operation and Manipulation) CFD Toolbox can simulate anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics, electromagnetics and the pricing of financial options
http://freshmeat.net/projects/openfoam/ license : GPL
http://gfs.sourceforge.net/ - [ [[http://gfs.sourceforge.net/gallery.html screenshots]] ] (GPL) library for the solution of the partial differential equations describing fluid flow
http://www.geuz.org/getdp/ (GPL) ""GetDP"" has been initially developed in the field of computational electromagnetics, general finite element solver using mixed elements to discretize de Rham-type complexes in one, two and three dimensions
http://www.geuz.org/gmsh/ - [ [[http://www.geuz.org/gmsh/#Screenshots screenshots]] ] (GPL) Gmsh is a three-dimensional finite element mesh generator with built-in pre- and post-processing facilities
http://www.hpfem.jku.at/netgen/index.html - [ [[http://www.hpfem.jku.at/netgen/index.html?/netgen/screenshots.html screenshots]] ] (LGPL) Netgen is an automatic 3d tetrahedral mesh generator
http://www.hpfem.jku.at/ngsolve/index.html (LGPL) NGSolve is a general purpose 3D finite element solver. Version 1.x supports scalar (heat flow), elasticity and magnetic field problems.
http://www.opencascade.org/ - [ [[http://www.opencascade.org/showroom/screenshots/ screenshots]] ] ([[http://www.opencascade.org/occ/license/ LGPL-like]]) Open CASCADE is a powerful CAD/CAM/CAE kernel and development platform for 3D modeling applications
http://www.mit.edu/~ibaran/kseg.html [en] GPL Geometry
http://www.stat.umn.edu/macanova/macanova.home.html [en] GPL interactive statistical analysis program
http://socnetv.sourceforge.net/ [en] GPL comprehensive Social Networks Analysis and Visualisation
http://eye.jimbomania.com/eyefract.html [en] maybe-GPL
http://jimbomania.com/glfract.html [en] GPL loads fractal {Mandelbrot, Julia} sets from file as specified by David Eyerman's Eyefract v0.6.0 and displays them in 3D space with ""OpenGL/Glut""
http://spike.sandia.gov/Trilinos/about.html Project Trilinos effort to develop and implement robust parallel algorithms using modern object-oriented software design, while still leveraging the value of established numerical libraries such as PETSc, Aztec, the BLAS and LAPACK.
http://www.ap-i.net/skychart/modules.php?op=modload&name=PagEd&file=index&page_id=18 [fr] cartes du ciel (skychart), compiles with lazarus free pascal
http://www.wings3d.com/index.php [en] Wings 3D is a subdivision modeler BSD, developed in erlang :-(
http://home.fnal.gov/~gnedin/IFRIT/ - [ [[http://home.fnal.gov/~gnedin/IFRIT/intro_shots.html screenshots]] ] (Public Domain) powerful tool that can be used to visualize 3-dimensional data sets
http://www.ncnr.nist.gov/xtal/software/gsas.html (BSD-like) GSAS (General Structure Analysis System) is a comprehensive system for the refinement of structural models to both x-ray and neutron diffraction data. The GSAS package can be used with both single-crystal and powder diffraction data (Rietveld analysis) -- TagScara
http://www.ncnr.nist.gov/programs/crystallography/software/expgui/expgui.html Public Domain tcl/tk EXPGUI is a GUI for GSAS
http://jsynoptic.sourceforge.net/ (LGPL) JSynoptic renders information graphically. It can be used as a simple graph plotter, or as a complex run-time monitoring environment
http://jsynoptic.sourceforge.net/screenshots.html
http://sourceforge.net/projects/jsynoptic/ Java
http://jcae.sourceforge.net/ (LGPL) # simple volumes modeler # finite elements mesher # portable on platforms which support Java and Opencascade
http://jcae.sourceforge.net/screenshots.html
http://www.sourceforge.net/projects/jcae Java
http://consult.cern.ch/writeup/garfield/files/ (no license found) Garfield is a computer program for the detailed simulation of two- and three-dimensional drift chambers.
===software that seems not free===
to be looked at later... even though they seem open source (OSI) approved. Non-commercial is a severe restriction :-(
http://femm.foster-miller.net/index.html A Windows finite element solver for 2D and axisymmetric magnetic and electrostatic problems with graphical pre- and post-processors.
http://femm.foster-miller.net/Archives/license.htm not a free license (cannot charge)
http://femm.foster-miller.net/Archives/linux/readme.htm runs in wine :-(
http://www.dealii.org/ - [[http://www.dealii.org/developer/license.html QPL licensing]] The main aim of deal.II is to enable development of modern finite element algorithms, using among other aspects sophisticated error estimators and adaptive meshes.
http://www.informatik.tu-darmstadt.de/TI/LiDIA/ - [[ftp://ftp.informatik.tu-darmstadt.de/pub/TI/systems/LiDIA/current/COPYING non-commercial license]] A ""C++"" Library For Computational Number Theory
http://www.ill.fr/pages/science/IGroups/diff/Soft/fp/index.html - [[ license to be found]] ""a set of crystallographic programs (FullProf, WinPLOTR, EdPCR, GFourier, etc...) mainly developed for Rietveld analysis (structure profile refinement) of neutron (constant wavelength, time of flight, nuclear and magnetic scattering) or X-ray powder diffraction data collected at constant or variable step in scattering angle 2theta."" -- TagScara
http://www-llb.cea.fr/fullweb/fp2k/fp2k_intro_whatis.htm brief presentation
http://www.ill.fr/pages/science/IGroups/diff/Soft/fp/php/downloads.html (last version when checked : June 2006)
http://www-llb.cea.fr/fullweb/fp2k/fp2k.htm (dates back to january 2003 ?)
http://www-llb.cea.fr/fullweb/others/jfullprof.htm jfullprof (java interface)
===Compilations of programs===
for programs that have not yet been packaged and that I try to get compiled see CompilePrograms
CompileElmer GPL tool using finite element method for multi-physics problems (compiles with g95 fortran ""gcc-c++"" ...)
TestCalculix GPL tool
TestScilab non-free license (non-commercial) tool for many scientific problems
===For Scara===
http://openscientist.lal.in2p3.fr/
http://wikiomics.org/wiki/Main_Page
http://www.openscience.org/links/index.php?section=21
http://pgopher.chm.bris.ac.uk/
http://www.steletch.org/spip.php?rubrique4
http://fsffrance.org/science/chimie.fr.html
http://www.alchem.org/
http://www.alchem.org/list.php3?id_rubrique=2 [fr] list of software
----
CategoryCookerDev
Deletions:
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http://www.caelinux.com/CMS/index.php?option=com_simpleboard


Revision [1423]

Edited on 2007-07-01 16:47:55 by LdfNmi [spam]
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Deletions:
Some links I find from time to time about interesting programs
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=232&catid=2 [en] many suggestions of programs, being sorted
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=218&catid=2 [en] some have been included
see CAELinuxSuggestions
https://www.scientificlinux.org/ distribution for scientific use, based on RHEL4
https://www.scientificlinux.org/distributions/4x/40/sl.release.note.40.i386 not much added :/ (openafs, mp3, ...) at least it permit to have a standard base
===presentation of products===
http://ceu.fi.udc.es/SAL/index.shtml SAL (Scientific Applications on Linux) is a collection of information and links to software that will be of interest to scientists and engineers. The broad coverage of Linux applications will also benefit the whole Linux/Unix community. There are currently 2,965 entries in SAL
http://ceu.fi.udc.es/SAL/B/index.shtml [en] list of Numerical Analysis programs
http://ceu.fi.udc.es/SAL/Z/2/index.shtml [en] list of chemical/biological software
http://savannah.fzk.de/ a german forge with scientific software (using grid)

http://www.gnu.org/software/gsl/ to be checked : programs based on gnu scientific library (maybe not all are packaged ?)
http://wiki.debian.org/DebianScienceDataPlotting plot programs in debian (or not)
http://zaimi.free.fr/informatique/ [fr] list of many programs
http://82.231.148.189/dokuwiki/doku.php?id=doc:veille:ingenierie [fr]
http://www-math.univ-fcomte.fr/pp_Annu/DCALUGARU/liens.php [fr]
http://ubunpingoo.tuxfamily.org/doku.php?id=installation_rapide_de_logiciels_utilisables_en_milieu_educatif [fr] many programs for science
http://www.aiaa-houston.org/newsletter/jan06/jan06.pdf [en] review of astronautics with octave, maxima, flight gear, ""IT++"", ode, openscenegraph
http://www.archilinux.org/archi-cao/archi-cao.html [fr] some programs either free or non-free for CAD, import autocad files in blender
http://www.tech-edv.co.at/lunix/CADlinks.html [en] table identifying CAD software for Linux with license type / source code provided / binary packages
http://www.tech-edv.co.at/lunix/UTILlinks.html [en] CAD/3d Utilities Links
http://www.tech-edv.co.at/lunix/MODlinks.html [en] Linux Modelers Links
http://www.evl.uic.edu/cavern/sage/applications.php Scalable Adaptive Graphics Environment (to be checked)
http://www.librecours.org/cgi-bin/main?callback=presentation [fr]
https://lipforge.ens-lyon.fr/softwaremap/trove_list.php
http://gforge.inria.fr/softwaremap/trove_list.php
http://www.inria.fr/valorisation/logiciels/calcul.fr.html
http://norma.mas.ecp.fr/wikimas/ScientificComputingSoftware [en] lots of sofware, some with a F/OSS license
http://www.loria.fr/software/tous?license=free&theme=all&search_string= [fr] list of sofware with free license
http://www.csc.fi/suomi/hakemisto/sovelluslista/ohjelmistot.html.en [en] Application software and databases at CSC (check what is free)
http://sw-tools.pdb.org/apps/MAXIT/index.html maxit Program Suite was developed by the PDB (Protein Data Bank) and NDB (Nucleic Acid Database) to assist in the processing and curation of macromolecular structure data
http://gersoo.free.fr/calsci/calsci1.html [fr] long list of products (either free software or sometimes not)
http://techer.pascal.free.fr/postgis/ [fr] geographic information systems (postgres with spatial options)
http://freshmeat.net/projects/aisee/ Free for non-commercial use graph browser which supports 15 layout algorithms, recursive graph nesting and easy printing
http://freshmeat.net/projects/siptoolbox/ scigraphica
http://luke.no-ip.org/code/ [en] many programs, some about fractals or open GL...
http://luke.no-ip.org/code/kueye/

http://g3d-cpp.sourceforge.net/ commercial-grade 3D Engine available as Open Source (BSD License). It is used in games, tech demos, research papers, military simulators, and university courses. It can support real-time rendering, off-line rendering, back-end game server management of 3D worlds, and use of graphics hardware for general purpose computing.
http://freshmeat.net/browse/97/
http://freshmeat.net/projects/ghemical/ A molecular modelling package with GUI and 3D-visualization tools.
http://freshmeat.net/projects/gmsh/ A 3D finite element mesh generator with built-in CAD engine and post-processor.
http://freshmeat.net/projects/visit/ Software for scientific visualization and analysis.
http://www.mathtools.net/ [en] many programs, most of them proprietary after a quick glance :-(
http://sourceforge.net/projects/elisa an open ""C++"" library for constraint programming and constraint solving techniques (requires gaol)
http://sourceforge.net/projects/gaol ""C++"" library for interval arithmetic (RPMs are available - requires IBM mathlib)
===List of existing packages or programs===
Those are lists of programs for GNU/Linux, which may be already packaged.
http://club.mandriva.com/xwiki/bin/KB/SciApps
http://rpms.mandrivaclub.com/rpms/Groups.html see http://rpms.mandrivaclub.com/rpms/Sciences_Mathematics.html and others in Sciences/you name it...
http://packages.ubuntu.com/breezy/math/
http://www.freshports.org/math/ ports for ""FreeBSD""
http://www.biolinux.org/soft.html rpm packages for biology => verify whether they are in plf or contrib
http://www.usinglinux.org/science/
http://www.jesuislibre.org/applications/Scientifique_et_Technique/ [fr] many programs to verify
http://repos.opensuse.org/science/SUSE_Factory/repodata/ a repository dedicated to Software for Scientists and Engineers (SUSE_Factory)
http://www.eso.org/science/scisoft/ packaging of astronomical software
http://www.eso.org/science/scisoft/rpm2html/Applications_Scientific.html
===Programs with packages available===
Those programs could be included either in main or in contrib, only need a maintainer and adaptation of spec file
http://calculix.de/ (GPL) Three-Dimensional Structural Finite Element Program
http://www.dhondt.de/ to download calculix
http://www.colorfullife.com/~manfred/ccx/ rpm are available
see TestCalculix
http://sourceforge.net/projects/apbs - [ [[http://sourceforge.net/project/screenshots.php?group_id=148472 screenshots]] ] (GPL) software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales
http://sourceforge.net/project/showfiles.php?group_id=148472 rpm are available
see CompileApbs
verify if this is obsoleted by what provides apbs...
http://www.fetk.org/ ""The Finite Element ToolKit (FEtk)"" is an evolving collection of parallel adaptive multilevel finite element software libraries and tools for solving coupled systems of partial differential equations (PDE) and integral equations (IE)
http://cam.ucsd.edu/~mholst/codes/maloc/index.html (GPL) MALOC (Minimal Abstraction Layer for Object-oriented C) is a small, portable, abstract C environment library for object-oriented C programming
http://cam.ucsd.edu/~mholst/codes/maloc/index.html#download rpm are available
http://cam.ucsd.edu/~mholst/codes/mc/index.html hum missing the downloading links :-(
http://cam.ucsd.edu/~mholst/codes/sg/index.html (GPL) SG is an unstructured simplex mesh OpenGL display and manipulation tool for use with the finite element research codes MC and PLTMG
http://cam.ucsd.edu/~mholst/codes/sg/index.html#download rpm are available
verify if this is obsoleted by what provides apbs...
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html (GPL) ""calcul formel, de la géométrie dynamique, du tableur et de la programmation. Xcas est une interface de Giac, une bibliothèque C++ de calcul formel libre (licence GPL). Giac dispose d'un mode de compatibilité avec les logiciels Maple et MuPAD et les calculatrices TI89/TI92/Voyage 200""
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html#packages debian packages available
http://www.math.u-bordeaux.fr/~belabas/pari/ PARI/GP computer algebra system designed for fast computations in number theory (factorizations, algebraic number theory, elliptic curves...)
http://modular.fas.harvard.edu/SAGE/ a graphical interface
===Programs not yet packaged===
Have a look at those programs, check license and whether packages (deb, rpm, ...) would be available
http://www2.enel.ucalgary.ca/~vigmond/flounder/ - Flounder is a quick way to visualize regularly spaced 4D data, i.e., a data set that is a function of x, y, z, and time.
http://cocoa.dima.unige.it/ (public domain) Computations in Commutative Algebra
http://www.gap-system.org (GPL) GAP is a system for computational discrete algebra, with particular emphasis on Computational Group Theory.
http://home.gna.org/mipisti/ (GPL) ""MicroscopePictureStitching (MiPiSti)"" arrange charts to one overall picture
https://gna.org/projects/mipisti project page
https://gna.org/projects/mini3d/ (GPL) mini3d is a set of basic tools for exporting/importing 3d mesh. This lib provide read/write 3d mesh in 3ds ascii format (.asc)
https://gna.org/projects/micromodel/ (GPL) ""This MicroModel library is about modeling low polycount 3d models. A visual mouse driven modeler is featured to help building models.""
http://cvs.gna.org/cvsweb/?cvsroot=micromodel cvs
https://gna.org/projects/metafract/ (GPL) Metafract is an all-purpose fractal generator using GTK+2.
http://svn.gna.org/viewcvs/metafract/trunk/ svn
http://www.decade-dynamics.org/ (GPL) Decade is an acronym for Dynamic Engine for Computer Aided DEsign software. It aims to provide a full dynamic engine for simulating rigid body. Decade can work as a standalone tool, as well as an extension for CATIA V5 and SolidWorks CAD softwares.
https://gna.org/projects/decade/ project page
http://download.gna.org/decade/ download
https://gna.org/projects/haplo/ (GPL) a finite element program
http://download.gna.org/haplo/debian/ debian packages
http://www.swox.com/gmp/ (LGPL) GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. There is no practical limit to the precision except the ones implied by the available memory in the machine GMP runs on. GMP has a rich set of functions, and the functions have a regular interface.
http://www.opencfd.co.uk/ (GPL) computational fluid dynamics (CFD) Open FOAM (Open Field Operation and Manipulation) CFD Toolbox can simulate anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics, electromagnetics and the pricing of financial options
http://freshmeat.net/projects/openfoam/ license : GPL
http://gfs.sourceforge.net/ - [ [[http://gfs.sourceforge.net/gallery.html screenshots]] ] (GPL) library for the solution of the partial differential equations describing fluid flow
http://www.geuz.org/getdp/ (GPL) ""GetDP"" has been initially developed in the field of computational electromagnetics, general finite element solver using mixed elements to discretize de Rham-type complexes in one, two and three dimensions
http://www.geuz.org/gmsh/ - [ [[http://www.geuz.org/gmsh/#Screenshots screenshots]] ] (GPL) Gmsh is a three-dimensional finite element mesh generator with built-in pre- and post-processing facilities
http://www.hpfem.jku.at/netgen/index.html - [ [[http://www.hpfem.jku.at/netgen/index.html?/netgen/screenshots.html screenshots]] ] (LGPL) Netgen is an automatic 3d tetrahedral mesh generator
http://www.hpfem.jku.at/ngsolve/index.html (LGPL) NGSolve is a general purpose 3D finite element solver. Version 1.x supports scalar (heat flow), elasticity and magnetic field problems.
http://www.opencascade.org/ - [ [[http://www.opencascade.org/showroom/screenshots/ screenshots]] ] ([[http://www.opencascade.org/occ/license/ LGPL-like]]) Open CASCADE is a powerful CAD/CAM/CAE kernel and development platform for 3D modeling applications
http://www.mit.edu/~ibaran/kseg.html [en] GPL Geometry
http://www.stat.umn.edu/macanova/macanova.home.html [en] GPL interactive statistical analysis program
http://socnetv.sourceforge.net/ [en] GPL comprehensive Social Networks Analysis and Visualisation
http://eye.jimbomania.com/eyefract.html [en] maybe-GPL
http://jimbomania.com/glfract.html [en] GPL loads fractal {Mandelbrot, Julia} sets from file as specified by David Eyerman's Eyefract v0.6.0 and displays them in 3D space with ""OpenGL/Glut""
http://spike.sandia.gov/Trilinos/about.html Project Trilinos effort to develop and implement robust parallel algorithms using modern object-oriented software design, while still leveraging the value of established numerical libraries such as PETSc, Aztec, the BLAS and LAPACK.
http://www.ap-i.net/skychart/modules.php?op=modload&name=PagEd&file=index&page_id=18 [fr] cartes du ciel (skychart), compiles with lazarus free pascal
http://www.wings3d.com/index.php [en] Wings 3D is a subdivision modeler BSD, developed in erlang :-(
http://home.fnal.gov/~gnedin/IFRIT/ - [ [[http://home.fnal.gov/~gnedin/IFRIT/intro_shots.html screenshots]] ] (Public Domain) powerful tool that can be used to visualize 3-dimensional data sets
http://www.ncnr.nist.gov/xtal/software/gsas.html (BSD-like) GSAS (General Structure Analysis System) is a comprehensive system for the refinement of structural models to both x-ray and neutron diffraction data. The GSAS package can be used with both single-crystal and powder diffraction data (Rietveld analysis) -- TagScara
http://www.ncnr.nist.gov/programs/crystallography/software/expgui/expgui.html Public Domain tcl/tk EXPGUI is a GUI for GSAS
http://jsynoptic.sourceforge.net/ (LGPL) JSynoptic renders information graphically. It can be used as a simple graph plotter, or as a complex run-time monitoring environment
http://jsynoptic.sourceforge.net/screenshots.html
http://sourceforge.net/projects/jsynoptic/ Java
http://jcae.sourceforge.net/ (LGPL) # simple volumes modeler # finite elements mesher # portable on platforms which support Java and Opencascade
http://jcae.sourceforge.net/screenshots.html
http://www.sourceforge.net/projects/jcae Java
http://consult.cern.ch/writeup/garfield/files/ (no license found) Garfield is a computer program for the detailed simulation of two- and three-dimensional drift chambers.
===software that seems not free===
to be looked at later... even though they seem open source (OSI) approved. Non-commercial is a severe restriction :-(
http://femm.foster-miller.net/index.html A Windows finite element solver for 2D and axisymmetric magnetic and electrostatic problems with graphical pre- and post-processors.
http://femm.foster-miller.net/Archives/license.htm not a free license (cannot charge)
http://femm.foster-miller.net/Archives/linux/readme.htm runs in wine :-(
http://www.dealii.org/ - [[http://www.dealii.org/developer/license.html QPL licensing]] The main aim of deal.II is to enable development of modern finite element algorithms, using among other aspects sophisticated error estimators and adaptive meshes.
http://www.informatik.tu-darmstadt.de/TI/LiDIA/ - [[ftp://ftp.informatik.tu-darmstadt.de/pub/TI/systems/LiDIA/current/COPYING non-commercial license]] A ""C++"" Library For Computational Number Theory
http://www.ill.fr/pages/science/IGroups/diff/Soft/fp/index.html - [[ license to be found]] ""a set of crystallographic programs (FullProf, WinPLOTR, EdPCR, GFourier, etc...) mainly developed for Rietveld analysis (structure profile refinement) of neutron (constant wavelength, time of flight, nuclear and magnetic scattering) or X-ray powder diffraction data collected at constant or variable step in scattering angle 2theta."" -- TagScara
http://www-llb.cea.fr/fullweb/fp2k/fp2k_intro_whatis.htm brief presentation
http://www.ill.fr/pages/science/IGroups/diff/Soft/fp/php/downloads.html (last version when checked : June 2006)
http://www-llb.cea.fr/fullweb/fp2k/fp2k.htm (dates back to january 2003 ?)
http://www-llb.cea.fr/fullweb/others/jfullprof.htm jfullprof (java interface)
===Compilations of programs===
for programs that have not yet been packaged and that I try to get compiled see CompilePrograms
CompileElmer GPL tool using finite element method for multi-physics problems (compiles with g95 fortran ""gcc-c++"" ...)
TestCalculix GPL tool
TestScilab non-free license (non-commercial) tool for many scientific problems
===For Scara===
http://openscientist.lal.in2p3.fr/
http://wikiomics.org/wiki/Main_Page
http://www.openscience.org/links/index.php?section=21
http://pgopher.chm.bris.ac.uk/
http://www.steletch.org/spip.php?rubrique4
http://fsffrance.org/science/chimie.fr.html
http://www.alchem.org/
http://www.alchem.org/list.php3?id_rubrique=2 [fr] list of software
----
CategoryCookerDev


Revision [1412]

Edited on 2007-06-29 09:45:14 by BenoitAudouard [spam]
Additions:
Some links I find from time to time about interesting programs
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=232&catid=2 [en] many suggestions of programs, being sorted
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=218&catid=2 [en] some have been included
see CAELinuxSuggestions
https://www.scientificlinux.org/ distribution for scientific use, based on RHEL4
https://www.scientificlinux.org/distributions/4x/40/sl.release.note.40.i386 not much added :/ (openafs, mp3, ...) at least it permit to have a standard base
===presentation of products===
http://ceu.fi.udc.es/SAL/index.shtml SAL (Scientific Applications on Linux) is a collection of information and links to software that will be of interest to scientists and engineers. The broad coverage of Linux applications will also benefit the whole Linux/Unix community. There are currently 2,965 entries in SAL
http://ceu.fi.udc.es/SAL/B/index.shtml [en] list of Numerical Analysis programs
http://ceu.fi.udc.es/SAL/Z/2/index.shtml [en] list of chemical/biological software
http://savannah.fzk.de/ a german forge with scientific software (using grid)

http://www.gnu.org/software/gsl/ to be checked : programs based on gnu scientific library (maybe not all are packaged ?)
http://wiki.debian.org/DebianScienceDataPlotting plot programs in debian (or not)
http://zaimi.free.fr/informatique/ [fr] list of many programs
http://82.231.148.189/dokuwiki/doku.php?id=doc:veille:ingenierie [fr]
http://www-math.univ-fcomte.fr/pp_Annu/DCALUGARU/liens.php [fr]
http://ubunpingoo.tuxfamily.org/doku.php?id=installation_rapide_de_logiciels_utilisables_en_milieu_educatif [fr] many programs for science
http://www.aiaa-houston.org/newsletter/jan06/jan06.pdf [en] review of astronautics with octave, maxima, flight gear, ""IT++"", ode, openscenegraph
http://www.archilinux.org/archi-cao/archi-cao.html [fr] some programs either free or non-free for CAD, import autocad files in blender
http://www.tech-edv.co.at/lunix/CADlinks.html [en] table identifying CAD software for Linux with license type / source code provided / binary packages
http://www.tech-edv.co.at/lunix/UTILlinks.html [en] CAD/3d Utilities Links
http://www.tech-edv.co.at/lunix/MODlinks.html [en] Linux Modelers Links
http://www.evl.uic.edu/cavern/sage/applications.php Scalable Adaptive Graphics Environment (to be checked)
http://www.librecours.org/cgi-bin/main?callback=presentation [fr]
https://lipforge.ens-lyon.fr/softwaremap/trove_list.php
http://gforge.inria.fr/softwaremap/trove_list.php
http://www.inria.fr/valorisation/logiciels/calcul.fr.html
http://norma.mas.ecp.fr/wikimas/ScientificComputingSoftware [en] lots of sofware, some with a F/OSS license
http://www.loria.fr/software/tous?license=free&theme=all&search_string= [fr] list of sofware with free license
http://www.csc.fi/suomi/hakemisto/sovelluslista/ohjelmistot.html.en [en] Application software and databases at CSC (check what is free)
http://sw-tools.pdb.org/apps/MAXIT/index.html maxit Program Suite was developed by the PDB (Protein Data Bank) and NDB (Nucleic Acid Database) to assist in the processing and curation of macromolecular structure data
http://gersoo.free.fr/calsci/calsci1.html [fr] long list of products (either free software or sometimes not)
http://techer.pascal.free.fr/postgis/ [fr] geographic information systems (postgres with spatial options)
http://freshmeat.net/projects/aisee/ Free for non-commercial use graph browser which supports 15 layout algorithms, recursive graph nesting and easy printing
http://freshmeat.net/projects/siptoolbox/ scigraphica
http://luke.no-ip.org/code/ [en] many programs, some about fractals or open GL...
http://luke.no-ip.org/code/kueye/

http://g3d-cpp.sourceforge.net/ commercial-grade 3D Engine available as Open Source (BSD License). It is used in games, tech demos, research papers, military simulators, and university courses. It can support real-time rendering, off-line rendering, back-end game server management of 3D worlds, and use of graphics hardware for general purpose computing.
http://freshmeat.net/browse/97/
http://freshmeat.net/projects/ghemical/ A molecular modelling package with GUI and 3D-visualization tools.
http://freshmeat.net/projects/gmsh/ A 3D finite element mesh generator with built-in CAD engine and post-processor.
http://freshmeat.net/projects/visit/ Software for scientific visualization and analysis.
http://www.mathtools.net/ [en] many programs, most of them proprietary after a quick glance :-(
http://sourceforge.net/projects/elisa an open ""C++"" library for constraint programming and constraint solving techniques (requires gaol)
http://sourceforge.net/projects/gaol ""C++"" library for interval arithmetic (RPMs are available - requires IBM mathlib)
===List of existing packages or programs===
Those are lists of programs for GNU/Linux, which may be already packaged.
http://club.mandriva.com/xwiki/bin/KB/SciApps
http://rpms.mandrivaclub.com/rpms/Groups.html see http://rpms.mandrivaclub.com/rpms/Sciences_Mathematics.html and others in Sciences/you name it...
http://packages.ubuntu.com/breezy/math/
http://www.freshports.org/math/ ports for ""FreeBSD""
http://www.biolinux.org/soft.html rpm packages for biology => verify whether they are in plf or contrib
http://www.usinglinux.org/science/
http://www.jesuislibre.org/applications/Scientifique_et_Technique/ [fr] many programs to verify
http://repos.opensuse.org/science/SUSE_Factory/repodata/ a repository dedicated to Software for Scientists and Engineers (SUSE_Factory)
http://www.eso.org/science/scisoft/ packaging of astronomical software
http://www.eso.org/science/scisoft/rpm2html/Applications_Scientific.html
===Programs with packages available===
Those programs could be included either in main or in contrib, only need a maintainer and adaptation of spec file
http://calculix.de/ (GPL) Three-Dimensional Structural Finite Element Program
http://www.dhondt.de/ to download calculix
http://www.colorfullife.com/~manfred/ccx/ rpm are available
see TestCalculix
http://sourceforge.net/projects/apbs - [ [[http://sourceforge.net/project/screenshots.php?group_id=148472 screenshots]] ] (GPL) software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales
http://sourceforge.net/project/showfiles.php?group_id=148472 rpm are available
see CompileApbs
verify if this is obsoleted by what provides apbs...
http://www.fetk.org/ ""The Finite Element ToolKit (FEtk)"" is an evolving collection of parallel adaptive multilevel finite element software libraries and tools for solving coupled systems of partial differential equations (PDE) and integral equations (IE)
http://cam.ucsd.edu/~mholst/codes/maloc/index.html (GPL) MALOC (Minimal Abstraction Layer for Object-oriented C) is a small, portable, abstract C environment library for object-oriented C programming
http://cam.ucsd.edu/~mholst/codes/maloc/index.html#download rpm are available
http://cam.ucsd.edu/~mholst/codes/mc/index.html hum missing the downloading links :-(
http://cam.ucsd.edu/~mholst/codes/sg/index.html (GPL) SG is an unstructured simplex mesh OpenGL display and manipulation tool for use with the finite element research codes MC and PLTMG
http://cam.ucsd.edu/~mholst/codes/sg/index.html#download rpm are available
verify if this is obsoleted by what provides apbs...
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html (GPL) ""calcul formel, de la géométrie dynamique, du tableur et de la programmation. Xcas est une interface de Giac, une bibliothèque C++ de calcul formel libre (licence GPL). Giac dispose d'un mode de compatibilité avec les logiciels Maple et MuPAD et les calculatrices TI89/TI92/Voyage 200""
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html#packages debian packages available
http://www.math.u-bordeaux.fr/~belabas/pari/ PARI/GP computer algebra system designed for fast computations in number theory (factorizations, algebraic number theory, elliptic curves...)
http://modular.fas.harvard.edu/SAGE/ a graphical interface
===Programs not yet packaged===
Have a look at those programs, check license and whether packages (deb, rpm, ...) would be available
http://www2.enel.ucalgary.ca/~vigmond/flounder/ - Flounder is a quick way to visualize regularly spaced 4D data, i.e., a data set that is a function of x, y, z, and time.
http://cocoa.dima.unige.it/ (public domain) Computations in Commutative Algebra
http://www.gap-system.org (GPL) GAP is a system for computational discrete algebra, with particular emphasis on Computational Group Theory.
http://home.gna.org/mipisti/ (GPL) ""MicroscopePictureStitching (MiPiSti)"" arrange charts to one overall picture
https://gna.org/projects/mipisti project page
https://gna.org/projects/mini3d/ (GPL) mini3d is a set of basic tools for exporting/importing 3d mesh. This lib provide read/write 3d mesh in 3ds ascii format (.asc)
https://gna.org/projects/micromodel/ (GPL) ""This MicroModel library is about modeling low polycount 3d models. A visual mouse driven modeler is featured to help building models.""
http://cvs.gna.org/cvsweb/?cvsroot=micromodel cvs
https://gna.org/projects/metafract/ (GPL) Metafract is an all-purpose fractal generator using GTK+2.
http://svn.gna.org/viewcvs/metafract/trunk/ svn
http://www.decade-dynamics.org/ (GPL) Decade is an acronym for Dynamic Engine for Computer Aided DEsign software. It aims to provide a full dynamic engine for simulating rigid body. Decade can work as a standalone tool, as well as an extension for CATIA V5 and SolidWorks CAD softwares.
https://gna.org/projects/decade/ project page
http://download.gna.org/decade/ download
https://gna.org/projects/haplo/ (GPL) a finite element program
http://download.gna.org/haplo/debian/ debian packages
http://www.swox.com/gmp/ (LGPL) GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. There is no practical limit to the precision except the ones implied by the available memory in the machine GMP runs on. GMP has a rich set of functions, and the functions have a regular interface.
http://www.opencfd.co.uk/ (GPL) computational fluid dynamics (CFD) Open FOAM (Open Field Operation and Manipulation) CFD Toolbox can simulate anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics, electromagnetics and the pricing of financial options
http://freshmeat.net/projects/openfoam/ license : GPL
http://gfs.sourceforge.net/ - [ [[http://gfs.sourceforge.net/gallery.html screenshots]] ] (GPL) library for the solution of the partial differential equations describing fluid flow
http://www.geuz.org/getdp/ (GPL) ""GetDP"" has been initially developed in the field of computational electromagnetics, general finite element solver using mixed elements to discretize de Rham-type complexes in one, two and three dimensions
http://www.geuz.org/gmsh/ - [ [[http://www.geuz.org/gmsh/#Screenshots screenshots]] ] (GPL) Gmsh is a three-dimensional finite element mesh generator with built-in pre- and post-processing facilities
http://www.hpfem.jku.at/netgen/index.html - [ [[http://www.hpfem.jku.at/netgen/index.html?/netgen/screenshots.html screenshots]] ] (LGPL) Netgen is an automatic 3d tetrahedral mesh generator
http://www.hpfem.jku.at/ngsolve/index.html (LGPL) NGSolve is a general purpose 3D finite element solver. Version 1.x supports scalar (heat flow), elasticity and magnetic field problems.
http://www.opencascade.org/ - [ [[http://www.opencascade.org/showroom/screenshots/ screenshots]] ] ([[http://www.opencascade.org/occ/license/ LGPL-like]]) Open CASCADE is a powerful CAD/CAM/CAE kernel and development platform for 3D modeling applications
http://www.mit.edu/~ibaran/kseg.html [en] GPL Geometry
http://www.stat.umn.edu/macanova/macanova.home.html [en] GPL interactive statistical analysis program
http://socnetv.sourceforge.net/ [en] GPL comprehensive Social Networks Analysis and Visualisation
http://eye.jimbomania.com/eyefract.html [en] maybe-GPL
http://jimbomania.com/glfract.html [en] GPL loads fractal {Mandelbrot, Julia} sets from file as specified by David Eyerman's Eyefract v0.6.0 and displays them in 3D space with ""OpenGL/Glut""
http://spike.sandia.gov/Trilinos/about.html Project Trilinos effort to develop and implement robust parallel algorithms using modern object-oriented software design, while still leveraging the value of established numerical libraries such as PETSc, Aztec, the BLAS and LAPACK.
http://www.ap-i.net/skychart/modules.php?op=modload&name=PagEd&file=index&page_id=18 [fr] cartes du ciel (skychart), compiles with lazarus free pascal
http://www.wings3d.com/index.php [en] Wings 3D is a subdivision modeler BSD, developed in erlang :-(
http://home.fnal.gov/~gnedin/IFRIT/ - [ [[http://home.fnal.gov/~gnedin/IFRIT/intro_shots.html screenshots]] ] (Public Domain) powerful tool that can be used to visualize 3-dimensional data sets
http://www.ncnr.nist.gov/xtal/software/gsas.html (BSD-like) GSAS (General Structure Analysis System) is a comprehensive system for the refinement of structural models to both x-ray and neutron diffraction data. The GSAS package can be used with both single-crystal and powder diffraction data (Rietveld analysis) -- TagScara
http://www.ncnr.nist.gov/programs/crystallography/software/expgui/expgui.html Public Domain tcl/tk EXPGUI is a GUI for GSAS
http://jsynoptic.sourceforge.net/ (LGPL) JSynoptic renders information graphically. It can be used as a simple graph plotter, or as a complex run-time monitoring environment
http://jsynoptic.sourceforge.net/screenshots.html
http://sourceforge.net/projects/jsynoptic/ Java
http://jcae.sourceforge.net/ (LGPL) # simple volumes modeler # finite elements mesher # portable on platforms which support Java and Opencascade
http://jcae.sourceforge.net/screenshots.html
http://www.sourceforge.net/projects/jcae Java
http://consult.cern.ch/writeup/garfield/files/ (no license found) Garfield is a computer program for the detailed simulation of two- and three-dimensional drift chambers.
===software that seems not free===
to be looked at later... even though they seem open source (OSI) approved. Non-commercial is a severe restriction :-(
http://femm.foster-miller.net/index.html A Windows finite element solver for 2D and axisymmetric magnetic and electrostatic problems with graphical pre- and post-processors.
http://femm.foster-miller.net/Archives/license.htm not a free license (cannot charge)
http://femm.foster-miller.net/Archives/linux/readme.htm runs in wine :-(
http://www.dealii.org/ - [[http://www.dealii.org/developer/license.html QPL licensing]] The main aim of deal.II is to enable development of modern finite element algorithms, using among other aspects sophisticated error estimators and adaptive meshes.
http://www.informatik.tu-darmstadt.de/TI/LiDIA/ - [[ftp://ftp.informatik.tu-darmstadt.de/pub/TI/systems/LiDIA/current/COPYING non-commercial license]] A ""C++"" Library For Computational Number Theory
http://www.ill.fr/pages/science/IGroups/diff/Soft/fp/index.html - [[ license to be found]] ""a set of crystallographic programs (FullProf, WinPLOTR, EdPCR, GFourier, etc...) mainly developed for Rietveld analysis (structure profile refinement) of neutron (constant wavelength, time of flight, nuclear and magnetic scattering) or X-ray powder diffraction data collected at constant or variable step in scattering angle 2theta."" -- TagScara
http://www-llb.cea.fr/fullweb/fp2k/fp2k_intro_whatis.htm brief presentation
http://www.ill.fr/pages/science/IGroups/diff/Soft/fp/php/downloads.html (last version when checked : June 2006)
http://www-llb.cea.fr/fullweb/fp2k/fp2k.htm (dates back to january 2003 ?)
http://www-llb.cea.fr/fullweb/others/jfullprof.htm jfullprof (java interface)
===Compilations of programs===
for programs that have not yet been packaged and that I try to get compiled see CompilePrograms
CompileElmer GPL tool using finite element method for multi-physics problems (compiles with g95 fortran ""gcc-c++"" ...)
TestCalculix GPL tool
TestScilab non-free license (non-commercial) tool for many scientific problems
===For Scara===
http://openscientist.lal.in2p3.fr/
http://wikiomics.org/wiki/Main_Page
http://www.openscience.org/links/index.php?section=21
http://pgopher.chm.bris.ac.uk/
http://www.steletch.org/spip.php?rubrique4
http://fsffrance.org/science/chimie.fr.html
http://www.alchem.org/
http://www.alchem.org/list.php3?id_rubrique=2 [fr] list of software
----
CategoryCookerDev
Deletions:
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http://www.caelinux.com/CMS/index.php?option=com_simpleboard


Revision [1410]

Edited on 2007-06-29 08:54:14 by LdfNmi [spam]
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Deletions:
Some links I find from time to time about interesting programs
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=232&catid=2 [en] many suggestions of programs, being sorted
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=218&catid=2 [en] some have been included
see CAELinuxSuggestions
https://www.scientificlinux.org/ distribution for scientific use, based on RHEL4
https://www.scientificlinux.org/distributions/4x/40/sl.release.note.40.i386 not much added :/ (openafs, mp3, ...) at least it permit to have a standard base
===presentation of products===
http://ceu.fi.udc.es/SAL/index.shtml SAL (Scientific Applications on Linux) is a collection of information and links to software that will be of interest to scientists and engineers. The broad coverage of Linux applications will also benefit the whole Linux/Unix community. There are currently 2,965 entries in SAL
http://ceu.fi.udc.es/SAL/B/index.shtml [en] list of Numerical Analysis programs
http://ceu.fi.udc.es/SAL/Z/2/index.shtml [en] list of chemical/biological software
http://savannah.fzk.de/ a german forge with scientific software (using grid)

http://www.gnu.org/software/gsl/ to be checked : programs based on gnu scientific library (maybe not all are packaged ?)
http://wiki.debian.org/DebianScienceDataPlotting plot programs in debian (or not)
http://zaimi.free.fr/informatique/ [fr] list of many programs
http://82.231.148.189/dokuwiki/doku.php?id=doc:veille:ingenierie [fr]
http://www-math.univ-fcomte.fr/pp_Annu/DCALUGARU/liens.php [fr]
http://ubunpingoo.tuxfamily.org/doku.php?id=installation_rapide_de_logiciels_utilisables_en_milieu_educatif [fr] many programs for science
http://www.aiaa-houston.org/newsletter/jan06/jan06.pdf [en] review of astronautics with octave, maxima, flight gear, ""IT++"", ode, openscenegraph
http://www.archilinux.org/archi-cao/archi-cao.html [fr] some programs either free or non-free for CAD, import autocad files in blender
http://www.tech-edv.co.at/lunix/CADlinks.html [en] table identifying CAD software for Linux with license type / source code provided / binary packages
http://www.tech-edv.co.at/lunix/UTILlinks.html [en] CAD/3d Utilities Links
http://www.tech-edv.co.at/lunix/MODlinks.html [en] Linux Modelers Links
http://www.evl.uic.edu/cavern/sage/applications.php Scalable Adaptive Graphics Environment (to be checked)
http://www.librecours.org/cgi-bin/main?callback=presentation [fr]
https://lipforge.ens-lyon.fr/softwaremap/trove_list.php
http://gforge.inria.fr/softwaremap/trove_list.php
http://www.inria.fr/valorisation/logiciels/calcul.fr.html
http://norma.mas.ecp.fr/wikimas/ScientificComputingSoftware [en] lots of sofware, some with a F/OSS license
http://www.loria.fr/software/tous?license=free&theme=all&search_string= [fr] list of sofware with free license
http://www.csc.fi/suomi/hakemisto/sovelluslista/ohjelmistot.html.en [en] Application software and databases at CSC (check what is free)
http://sw-tools.pdb.org/apps/MAXIT/index.html maxit Program Suite was developed by the PDB (Protein Data Bank) and NDB (Nucleic Acid Database) to assist in the processing and curation of macromolecular structure data
http://gersoo.free.fr/calsci/calsci1.html [fr] long list of products (either free software or sometimes not)
http://techer.pascal.free.fr/postgis/ [fr] geographic information systems (postgres with spatial options)
http://freshmeat.net/projects/aisee/ Free for non-commercial use graph browser which supports 15 layout algorithms, recursive graph nesting and easy printing
http://freshmeat.net/projects/siptoolbox/ scigraphica
http://luke.no-ip.org/code/ [en] many programs, some about fractals or open GL...
http://luke.no-ip.org/code/kueye/

http://g3d-cpp.sourceforge.net/ commercial-grade 3D Engine available as Open Source (BSD License). It is used in games, tech demos, research papers, military simulators, and university courses. It can support real-time rendering, off-line rendering, back-end game server management of 3D worlds, and use of graphics hardware for general purpose computing.
http://freshmeat.net/browse/97/
http://freshmeat.net/projects/ghemical/ A molecular modelling package with GUI and 3D-visualization tools.
http://freshmeat.net/projects/gmsh/ A 3D finite element mesh generator with built-in CAD engine and post-processor.
http://freshmeat.net/projects/visit/ Software for scientific visualization and analysis.
http://www.mathtools.net/ [en] many programs, most of them proprietary after a quick glance :-(
http://sourceforge.net/projects/elisa an open ""C++"" library for constraint programming and constraint solving techniques (requires gaol)
http://sourceforge.net/projects/gaol ""C++"" library for interval arithmetic (RPMs are available - requires IBM mathlib)
===List of existing packages or programs===
Those are lists of programs for GNU/Linux, which may be already packaged.
http://club.mandriva.com/xwiki/bin/KB/SciApps
http://rpms.mandrivaclub.com/rpms/Groups.html see http://rpms.mandrivaclub.com/rpms/Sciences_Mathematics.html and others in Sciences/you name it...
http://packages.ubuntu.com/breezy/math/
http://www.freshports.org/math/ ports for ""FreeBSD""
http://www.biolinux.org/soft.html rpm packages for biology => verify whether they are in plf or contrib
http://www.usinglinux.org/science/
http://www.jesuislibre.org/applications/Scientifique_et_Technique/ [fr] many programs to verify
http://repos.opensuse.org/science/SUSE_Factory/repodata/ a repository dedicated to Software for Scientists and Engineers (SUSE_Factory)
http://www.eso.org/science/scisoft/ packaging of astronomical software
http://www.eso.org/science/scisoft/rpm2html/Applications_Scientific.html
===Programs with packages available===
Those programs could be included either in main or in contrib, only need a maintainer and adaptation of spec file
http://calculix.de/ (GPL) Three-Dimensional Structural Finite Element Program
http://www.dhondt.de/ to download calculix
http://www.colorfullife.com/~manfred/ccx/ rpm are available
see TestCalculix
http://sourceforge.net/projects/apbs - [ [[http://sourceforge.net/project/screenshots.php?group_id=148472 screenshots]] ] (GPL) software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales
http://sourceforge.net/project/showfiles.php?group_id=148472 rpm are available
see CompileApbs
verify if this is obsoleted by what provides apbs...
http://www.fetk.org/ ""The Finite Element ToolKit (FEtk)"" is an evolving collection of parallel adaptive multilevel finite element software libraries and tools for solving coupled systems of partial differential equations (PDE) and integral equations (IE)
http://cam.ucsd.edu/~mholst/codes/maloc/index.html (GPL) MALOC (Minimal Abstraction Layer for Object-oriented C) is a small, portable, abstract C environment library for object-oriented C programming
http://cam.ucsd.edu/~mholst/codes/maloc/index.html#download rpm are available
http://cam.ucsd.edu/~mholst/codes/mc/index.html hum missing the downloading links :-(
http://cam.ucsd.edu/~mholst/codes/sg/index.html (GPL) SG is an unstructured simplex mesh OpenGL display and manipulation tool for use with the finite element research codes MC and PLTMG
http://cam.ucsd.edu/~mholst/codes/sg/index.html#download rpm are available
verify if this is obsoleted by what provides apbs...
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html (GPL) ""calcul formel, de la géométrie dynamique, du tableur et de la programmation. Xcas est une interface de Giac, une bibliothèque C++ de calcul formel libre (licence GPL). Giac dispose d'un mode de compatibilité avec les logiciels Maple et MuPAD et les calculatrices TI89/TI92/Voyage 200""
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html#packages debian packages available
http://www.math.u-bordeaux.fr/~belabas/pari/ PARI/GP computer algebra system designed for fast computations in number theory (factorizations, algebraic number theory, elliptic curves...)
http://modular.fas.harvard.edu/SAGE/ a graphical interface
===Programs not yet packaged===
Have a look at those programs, check license and whether packages (deb, rpm, ...) would be available
http://www2.enel.ucalgary.ca/~vigmond/flounder/ - Flounder is a quick way to visualize regularly spaced 4D data, i.e., a data set that is a function of x, y, z, and time.
http://cocoa.dima.unige.it/ (public domain) Computations in Commutative Algebra
http://www.gap-system.org (GPL) GAP is a system for computational discrete algebra, with particular emphasis on Computational Group Theory.
http://home.gna.org/mipisti/ (GPL) ""MicroscopePictureStitching (MiPiSti)"" arrange charts to one overall picture
https://gna.org/projects/mipisti project page
https://gna.org/projects/mini3d/ (GPL) mini3d is a set of basic tools for exporting/importing 3d mesh. This lib provide read/write 3d mesh in 3ds ascii format (.asc)
https://gna.org/projects/micromodel/ (GPL) ""This MicroModel library is about modeling low polycount 3d models. A visual mouse driven modeler is featured to help building models.""
http://cvs.gna.org/cvsweb/?cvsroot=micromodel cvs
https://gna.org/projects/metafract/ (GPL) Metafract is an all-purpose fractal generator using GTK+2.
http://svn.gna.org/viewcvs/metafract/trunk/ svn
http://www.decade-dynamics.org/ (GPL) Decade is an acronym for Dynamic Engine for Computer Aided DEsign software. It aims to provide a full dynamic engine for simulating rigid body. Decade can work as a standalone tool, as well as an extension for CATIA V5 and SolidWorks CAD softwares.
https://gna.org/projects/decade/ project page
http://download.gna.org/decade/ download
https://gna.org/projects/haplo/ (GPL) a finite element program
http://download.gna.org/haplo/debian/ debian packages
http://www.swox.com/gmp/ (LGPL) GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. There is no practical limit to the precision except the ones implied by the available memory in the machine GMP runs on. GMP has a rich set of functions, and the functions have a regular interface.
http://www.opencfd.co.uk/ (GPL) computational fluid dynamics (CFD) Open FOAM (Open Field Operation and Manipulation) CFD Toolbox can simulate anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics, electromagnetics and the pricing of financial options
http://freshmeat.net/projects/openfoam/ license : GPL
http://gfs.sourceforge.net/ - [ [[http://gfs.sourceforge.net/gallery.html screenshots]] ] (GPL) library for the solution of the partial differential equations describing fluid flow
http://www.geuz.org/getdp/ (GPL) ""GetDP"" has been initially developed in the field of computational electromagnetics, general finite element solver using mixed elements to discretize de Rham-type complexes in one, two and three dimensions
http://www.geuz.org/gmsh/ - [ [[http://www.geuz.org/gmsh/#Screenshots screenshots]] ] (GPL) Gmsh is a three-dimensional finite element mesh generator with built-in pre- and post-processing facilities
http://www.hpfem.jku.at/netgen/index.html - [ [[http://www.hpfem.jku.at/netgen/index.html?/netgen/screenshots.html screenshots]] ] (LGPL) Netgen is an automatic 3d tetrahedral mesh generator
http://www.hpfem.jku.at/ngsolve/index.html (LGPL) NGSolve is a general purpose 3D finite element solver. Version 1.x supports scalar (heat flow), elasticity and magnetic field problems.
http://www.opencascade.org/ - [ [[http://www.opencascade.org/showroom/screenshots/ screenshots]] ] ([[http://www.opencascade.org/occ/license/ LGPL-like]]) Open CASCADE is a powerful CAD/CAM/CAE kernel and development platform for 3D modeling applications
http://www.mit.edu/~ibaran/kseg.html [en] GPL Geometry
http://www.stat.umn.edu/macanova/macanova.home.html [en] GPL interactive statistical analysis program
http://socnetv.sourceforge.net/ [en] GPL comprehensive Social Networks Analysis and Visualisation
http://eye.jimbomania.com/eyefract.html [en] maybe-GPL
http://jimbomania.com/glfract.html [en] GPL loads fractal {Mandelbrot, Julia} sets from file as specified by David Eyerman's Eyefract v0.6.0 and displays them in 3D space with ""OpenGL/Glut""
http://spike.sandia.gov/Trilinos/about.html Project Trilinos effort to develop and implement robust parallel algorithms using modern object-oriented software design, while still leveraging the value of established numerical libraries such as PETSc, Aztec, the BLAS and LAPACK.
http://www.ap-i.net/skychart/modules.php?op=modload&name=PagEd&file=index&page_id=18 [fr] cartes du ciel (skychart), compiles with lazarus free pascal
http://www.wings3d.com/index.php [en] Wings 3D is a subdivision modeler BSD, developed in erlang :-(
http://home.fnal.gov/~gnedin/IFRIT/ - [ [[http://home.fnal.gov/~gnedin/IFRIT/intro_shots.html screenshots]] ] (Public Domain) powerful tool that can be used to visualize 3-dimensional data sets
http://www.ncnr.nist.gov/xtal/software/gsas.html (BSD-like) GSAS (General Structure Analysis System) is a comprehensive system for the refinement of structural models to both x-ray and neutron diffraction data. The GSAS package can be used with both single-crystal and powder diffraction data (Rietveld analysis) -- TagScara
http://www.ncnr.nist.gov/programs/crystallography/software/expgui/expgui.html Public Domain tcl/tk EXPGUI is a GUI for GSAS
http://jsynoptic.sourceforge.net/ (LGPL) JSynoptic renders information graphically. It can be used as a simple graph plotter, or as a complex run-time monitoring environment
http://jsynoptic.sourceforge.net/screenshots.html
http://sourceforge.net/projects/jsynoptic/ Java
http://jcae.sourceforge.net/ (LGPL) # simple volumes modeler # finite elements mesher # portable on platforms which support Java and Opencascade
http://jcae.sourceforge.net/screenshots.html
http://www.sourceforge.net/projects/jcae Java
http://consult.cern.ch/writeup/garfield/files/ (no license found) Garfield is a computer program for the detailed simulation of two- and three-dimensional drift chambers.
===software that seems not free===
to be looked at later... even though they seem open source (OSI) approved. Non-commercial is a severe restriction :-(
http://femm.foster-miller.net/index.html A Windows finite element solver for 2D and axisymmetric magnetic and electrostatic problems with graphical pre- and post-processors.
http://femm.foster-miller.net/Archives/license.htm not a free license (cannot charge)
http://femm.foster-miller.net/Archives/linux/readme.htm runs in wine :-(
http://www.dealii.org/ - [[http://www.dealii.org/developer/license.html QPL licensing]] The main aim of deal.II is to enable development of modern finite element algorithms, using among other aspects sophisticated error estimators and adaptive meshes.
http://www.informatik.tu-darmstadt.de/TI/LiDIA/ - [[ftp://ftp.informatik.tu-darmstadt.de/pub/TI/systems/LiDIA/current/COPYING non-commercial license]] A ""C++"" Library For Computational Number Theory
http://www.ill.fr/pages/science/IGroups/diff/Soft/fp/index.html - [[ license to be found]] ""a set of crystallographic programs (FullProf, WinPLOTR, EdPCR, GFourier, etc...) mainly developed for Rietveld analysis (structure profile refinement) of neutron (constant wavelength, time of flight, nuclear and magnetic scattering) or X-ray powder diffraction data collected at constant or variable step in scattering angle 2theta."" -- TagScara
http://www-llb.cea.fr/fullweb/fp2k/fp2k_intro_whatis.htm brief presentation
http://www.ill.fr/pages/science/IGroups/diff/Soft/fp/php/downloads.html (last version when checked : June 2006)
http://www-llb.cea.fr/fullweb/fp2k/fp2k.htm (dates back to january 2003 ?)
http://www-llb.cea.fr/fullweb/others/jfullprof.htm jfullprof (java interface)
===Compilations of programs===
for programs that have not yet been packaged and that I try to get compiled see CompilePrograms
CompileElmer GPL tool using finite element method for multi-physics problems (compiles with g95 fortran ""gcc-c++"" ...)
TestCalculix GPL tool
TestScilab non-free license (non-commercial) tool for many scientific problems
===For Scara===
http://openscientist.lal.in2p3.fr/
http://wikiomics.org/wiki/Main_Page
http://www.openscience.org/links/index.php?section=21
http://pgopher.chm.bris.ac.uk/
http://www.steletch.org/spip.php?rubrique4
http://fsffrance.org/science/chimie.fr.html
http://www.alchem.org/
http://www.alchem.org/list.php3?id_rubrique=2 [fr] list of software
----
CategoryCookerDev


Revision [1406]

Edited on 2007-06-28 21:10:09 by BenoitAudouard [spam]
Additions:
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=232&catid=2 [en] many suggestions of programs, being sorted
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=218&catid=2 [en] some have been included
see CAELinuxSuggestions
https://www.scientificlinux.org/ distribution for scientific use, based on RHEL4
https://www.scientificlinux.org/distributions/4x/40/sl.release.note.40.i386 not much added :/ (openafs, mp3, ...) at least it permit to have a standard base
===presentation of products===
http://ceu.fi.udc.es/SAL/index.shtml SAL (Scientific Applications on Linux) is a collection of information and links to software that will be of interest to scientists and engineers. The broad coverage of Linux applications will also benefit the whole Linux/Unix community. There are currently 2,965 entries in SAL
http://ceu.fi.udc.es/SAL/B/index.shtml [en] list of Numerical Analysis programs
http://ceu.fi.udc.es/SAL/Z/2/index.shtml [en] list of chemical/biological software
http://savannah.fzk.de/ a german forge with scientific software (using grid)

http://www.gnu.org/software/gsl/ to be checked : programs based on gnu scientific library (maybe not all are packaged ?)
http://wiki.debian.org/DebianScienceDataPlotting plot programs in debian (or not)
http://zaimi.free.fr/informatique/ [fr] list of many programs
http://82.231.148.189/dokuwiki/doku.php?id=doc:veille:ingenierie [fr]
http://www-math.univ-fcomte.fr/pp_Annu/DCALUGARU/liens.php [fr]
http://ubunpingoo.tuxfamily.org/doku.php?id=installation_rapide_de_logiciels_utilisables_en_milieu_educatif [fr] many programs for science
http://www.aiaa-houston.org/newsletter/jan06/jan06.pdf [en] review of astronautics with octave, maxima, flight gear, ""IT++"", ode, openscenegraph
http://www.archilinux.org/archi-cao/archi-cao.html [fr] some programs either free or non-free for CAD, import autocad files in blender
http://www.tech-edv.co.at/lunix/CADlinks.html [en] table identifying CAD software for Linux with license type / source code provided / binary packages
http://www.tech-edv.co.at/lunix/UTILlinks.html [en] CAD/3d Utilities Links
http://www.tech-edv.co.at/lunix/MODlinks.html [en] Linux Modelers Links
http://www.evl.uic.edu/cavern/sage/applications.php Scalable Adaptive Graphics Environment (to be checked)
http://www.librecours.org/cgi-bin/main?callback=presentation [fr]
https://lipforge.ens-lyon.fr/softwaremap/trove_list.php
http://gforge.inria.fr/softwaremap/trove_list.php
http://www.inria.fr/valorisation/logiciels/calcul.fr.html
http://norma.mas.ecp.fr/wikimas/ScientificComputingSoftware [en] lots of sofware, some with a F/OSS license
http://www.loria.fr/software/tous?license=free&theme=all&search_string= [fr] list of sofware with free license
http://www.csc.fi/suomi/hakemisto/sovelluslista/ohjelmistot.html.en [en] Application software and databases at CSC (check what is free)
http://sw-tools.pdb.org/apps/MAXIT/index.html maxit Program Suite was developed by the PDB (Protein Data Bank) and NDB (Nucleic Acid Database) to assist in the processing and curation of macromolecular structure data
http://gersoo.free.fr/calsci/calsci1.html [fr] long list of products (either free software or sometimes not)
http://techer.pascal.free.fr/postgis/ [fr] geographic information systems (postgres with spatial options)
http://freshmeat.net/projects/aisee/ Free for non-commercial use graph browser which supports 15 layout algorithms, recursive graph nesting and easy printing
http://freshmeat.net/projects/siptoolbox/ scigraphica
http://luke.no-ip.org/code/ [en] many programs, some about fractals or open GL...
http://luke.no-ip.org/code/kueye/

http://g3d-cpp.sourceforge.net/ commercial-grade 3D Engine available as Open Source (BSD License). It is used in games, tech demos, research papers, military simulators, and university courses. It can support real-time rendering, off-line rendering, back-end game server management of 3D worlds, and use of graphics hardware for general purpose computing.
http://freshmeat.net/browse/97/
http://freshmeat.net/projects/ghemical/ A molecular modelling package with GUI and 3D-visualization tools.
http://freshmeat.net/projects/gmsh/ A 3D finite element mesh generator with built-in CAD engine and post-processor.
http://freshmeat.net/projects/visit/ Software for scientific visualization and analysis.
http://www.mathtools.net/ [en] many programs, most of them proprietary after a quick glance :-(
http://sourceforge.net/projects/elisa an open ""C++"" library for constraint programming and constraint solving techniques (requires gaol)
http://sourceforge.net/projects/gaol ""C++"" library for interval arithmetic (RPMs are available - requires IBM mathlib)
===List of existing packages or programs===
Those are lists of programs for GNU/Linux, which may be already packaged.
http://club.mandriva.com/xwiki/bin/KB/SciApps
http://rpms.mandrivaclub.com/rpms/Groups.html see http://rpms.mandrivaclub.com/rpms/Sciences_Mathematics.html and others in Sciences/you name it...
http://packages.ubuntu.com/breezy/math/
http://www.freshports.org/math/ ports for ""FreeBSD""
http://www.biolinux.org/soft.html rpm packages for biology => verify whether they are in plf or contrib
http://www.usinglinux.org/science/
http://www.jesuislibre.org/applications/Scientifique_et_Technique/ [fr] many programs to verify
http://repos.opensuse.org/science/SUSE_Factory/repodata/ a repository dedicated to Software for Scientists and Engineers (SUSE_Factory)
http://www.eso.org/science/scisoft/ packaging of astronomical software
http://www.eso.org/science/scisoft/rpm2html/Applications_Scientific.html
===Programs with packages available===
Those programs could be included either in main or in contrib, only need a maintainer and adaptation of spec file
http://calculix.de/ (GPL) Three-Dimensional Structural Finite Element Program
http://www.dhondt.de/ to download calculix
http://www.colorfullife.com/~manfred/ccx/ rpm are available
see TestCalculix
http://sourceforge.net/projects/apbs - [ [[http://sourceforge.net/project/screenshots.php?group_id=148472 screenshots]] ] (GPL) software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales
http://sourceforge.net/project/showfiles.php?group_id=148472 rpm are available
see CompileApbs
verify if this is obsoleted by what provides apbs...
http://www.fetk.org/ ""The Finite Element ToolKit (FEtk)"" is an evolving collection of parallel adaptive multilevel finite element software libraries and tools for solving coupled systems of partial differential equations (PDE) and integral equations (IE)
http://cam.ucsd.edu/~mholst/codes/maloc/index.html (GPL) MALOC (Minimal Abstraction Layer for Object-oriented C) is a small, portable, abstract C environment library for object-oriented C programming
http://cam.ucsd.edu/~mholst/codes/maloc/index.html#download rpm are available
http://cam.ucsd.edu/~mholst/codes/mc/index.html hum missing the downloading links :-(
http://cam.ucsd.edu/~mholst/codes/sg/index.html (GPL) SG is an unstructured simplex mesh OpenGL display and manipulation tool for use with the finite element research codes MC and PLTMG
http://cam.ucsd.edu/~mholst/codes/sg/index.html#download rpm are available
verify if this is obsoleted by what provides apbs...
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html (GPL) ""calcul formel, de la géométrie dynamique, du tableur et de la programmation. Xcas est une interface de Giac, une bibliothèque C++ de calcul formel libre (licence GPL). Giac dispose d'un mode de compatibilité avec les logiciels Maple et MuPAD et les calculatrices TI89/TI92/Voyage 200""
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html#packages debian packages available
http://www.math.u-bordeaux.fr/~belabas/pari/ PARI/GP computer algebra system designed for fast computations in number theory (factorizations, algebraic number theory, elliptic curves...)
http://modular.fas.harvard.edu/SAGE/ a graphical interface
===Programs not yet packaged===
Have a look at those programs, check license and whether packages (deb, rpm, ...) would be available
http://www2.enel.ucalgary.ca/~vigmond/flounder/ - Flounder is a quick way to visualize regularly spaced 4D data, i.e., a data set that is a function of x, y, z, and time.
http://cocoa.dima.unige.it/ (public domain) Computations in Commutative Algebra
http://www.gap-system.org (GPL) GAP is a system for computational discrete algebra, with particular emphasis on Computational Group Theory.
http://home.gna.org/mipisti/ (GPL) ""MicroscopePictureStitching (MiPiSti)"" arrange charts to one overall picture
https://gna.org/projects/mipisti project page
https://gna.org/projects/mini3d/ (GPL) mini3d is a set of basic tools for exporting/importing 3d mesh. This lib provide read/write 3d mesh in 3ds ascii format (.asc)
https://gna.org/projects/micromodel/ (GPL) ""This MicroModel library is about modeling low polycount 3d models. A visual mouse driven modeler is featured to help building models.""
http://cvs.gna.org/cvsweb/?cvsroot=micromodel cvs
https://gna.org/projects/metafract/ (GPL) Metafract is an all-purpose fractal generator using GTK+2.
http://svn.gna.org/viewcvs/metafract/trunk/ svn
http://www.decade-dynamics.org/ (GPL) Decade is an acronym for Dynamic Engine for Computer Aided DEsign software. It aims to provide a full dynamic engine for simulating rigid body. Decade can work as a standalone tool, as well as an extension for CATIA V5 and SolidWorks CAD softwares.
https://gna.org/projects/decade/ project page
http://download.gna.org/decade/ download
https://gna.org/projects/haplo/ (GPL) a finite element program
http://download.gna.org/haplo/debian/ debian packages
http://www.swox.com/gmp/ (LGPL) GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. There is no practical limit to the precision except the ones implied by the available memory in the machine GMP runs on. GMP has a rich set of functions, and the functions have a regular interface.
http://www.opencfd.co.uk/ (GPL) computational fluid dynamics (CFD) Open FOAM (Open Field Operation and Manipulation) CFD Toolbox can simulate anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics, electromagnetics and the pricing of financial options
http://freshmeat.net/projects/openfoam/ license : GPL
http://gfs.sourceforge.net/ - [ [[http://gfs.sourceforge.net/gallery.html screenshots]] ] (GPL) library for the solution of the partial differential equations describing fluid flow
http://www.geuz.org/getdp/ (GPL) ""GetDP"" has been initially developed in the field of computational electromagnetics, general finite element solver using mixed elements to discretize de Rham-type complexes in one, two and three dimensions
http://www.geuz.org/gmsh/ - [ [[http://www.geuz.org/gmsh/#Screenshots screenshots]] ] (GPL) Gmsh is a three-dimensional finite element mesh generator with built-in pre- and post-processing facilities
http://www.hpfem.jku.at/netgen/index.html - [ [[http://www.hpfem.jku.at/netgen/index.html?/netgen/screenshots.html screenshots]] ] (LGPL) Netgen is an automatic 3d tetrahedral mesh generator
http://www.hpfem.jku.at/ngsolve/index.html (LGPL) NGSolve is a general purpose 3D finite element solver. Version 1.x supports scalar (heat flow), elasticity and magnetic field problems.
http://www.opencascade.org/ - [ [[http://www.opencascade.org/showroom/screenshots/ screenshots]] ] ([[http://www.opencascade.org/occ/license/ LGPL-like]]) Open CASCADE is a powerful CAD/CAM/CAE kernel and development platform for 3D modeling applications
http://www.mit.edu/~ibaran/kseg.html [en] GPL Geometry
http://www.stat.umn.edu/macanova/macanova.home.html [en] GPL interactive statistical analysis program
http://socnetv.sourceforge.net/ [en] GPL comprehensive Social Networks Analysis and Visualisation
http://eye.jimbomania.com/eyefract.html [en] maybe-GPL
http://jimbomania.com/glfract.html [en] GPL loads fractal {Mandelbrot, Julia} sets from file as specified by David Eyerman's Eyefract v0.6.0 and displays them in 3D space with ""OpenGL/Glut""
http://spike.sandia.gov/Trilinos/about.html Project Trilinos effort to develop and implement robust parallel algorithms using modern object-oriented software design, while still leveraging the value of established numerical libraries such as PETSc, Aztec, the BLAS and LAPACK.
http://www.ap-i.net/skychart/modules.php?op=modload&name=PagEd&file=index&page_id=18 [fr] cartes du ciel (skychart), compiles with lazarus free pascal
http://www.wings3d.com/index.php [en] Wings 3D is a subdivision modeler BSD, developed in erlang :-(
http://home.fnal.gov/~gnedin/IFRIT/ - [ [[http://home.fnal.gov/~gnedin/IFRIT/intro_shots.html screenshots]] ] (Public Domain) powerful tool that can be used to visualize 3-dimensional data sets
http://www.ncnr.nist.gov/xtal/software/gsas.html (BSD-like) GSAS (General Structure Analysis System) is a comprehensive system for the refinement of structural models to both x-ray and neutron diffraction data. The GSAS package can be used with both single-crystal and powder diffraction data (Rietveld analysis) -- TagScara
http://www.ncnr.nist.gov/programs/crystallography/software/expgui/expgui.html Public Domain tcl/tk EXPGUI is a GUI for GSAS
http://jsynoptic.sourceforge.net/ (LGPL) JSynoptic renders information graphically. It can be used as a simple graph plotter, or as a complex run-time monitoring environment
http://jsynoptic.sourceforge.net/screenshots.html
http://sourceforge.net/projects/jsynoptic/ Java
http://jcae.sourceforge.net/ (LGPL) # simple volumes modeler # finite elements mesher # portable on platforms which support Java and Opencascade
http://jcae.sourceforge.net/screenshots.html
http://www.sourceforge.net/projects/jcae Java
http://consult.cern.ch/writeup/garfield/files/ (no license found) Garfield is a computer program for the detailed simulation of two- and three-dimensional drift chambers.
===software that seems not free===
to be looked at later... even though they seem open source (OSI) approved. Non-commercial is a severe restriction :-(
http://femm.foster-miller.net/index.html A Windows finite element solver for 2D and axisymmetric magnetic and electrostatic problems with graphical pre- and post-processors.
http://femm.foster-miller.net/Archives/license.htm not a free license (cannot charge)
http://femm.foster-miller.net/Archives/linux/readme.htm runs in wine :-(
http://www.dealii.org/ - [[http://www.dealii.org/developer/license.html QPL licensing]] The main aim of deal.II is to enable development of modern finite element algorithms, using among other aspects sophisticated error estimators and adaptive meshes.
http://www.informatik.tu-darmstadt.de/TI/LiDIA/ - [[ftp://ftp.informatik.tu-darmstadt.de/pub/TI/systems/LiDIA/current/COPYING non-commercial license]] A ""C++"" Library For Computational Number Theory
http://www.ill.fr/pages/science/IGroups/diff/Soft/fp/index.html - [[ license to be found]] ""a set of crystallographic programs (FullProf, WinPLOTR, EdPCR, GFourier, etc...) mainly developed for Rietveld analysis (structure profile refinement) of neutron (constant wavelength, time of flight, nuclear and magnetic scattering) or X-ray powder diffraction data collected at constant or variable step in scattering angle 2theta."" -- TagScara
http://www-llb.cea.fr/fullweb/fp2k/fp2k_intro_whatis.htm brief presentation
http://www.ill.fr/pages/science/IGroups/diff/Soft/fp/php/downloads.html (last version when checked : June 2006)
http://www-llb.cea.fr/fullweb/fp2k/fp2k.htm (dates back to january 2003 ?)
http://www-llb.cea.fr/fullweb/others/jfullprof.htm jfullprof (java interface)
===Compilations of programs===
for programs that have not yet been packaged and that I try to get compiled see CompilePrograms
CompileElmer GPL tool using finite element method for multi-physics problems (compiles with g95 fortran ""gcc-c++"" ...)
TestCalculix GPL tool
TestScilab non-free license (non-commercial) tool for many scientific problems
===For Scara===
http://openscientist.lal.in2p3.fr/
http://wikiomics.org/wiki/Main_Page
http://www.openscience.org/links/index.php?section=21
http://pgopher.chm.bris.ac.uk/
http://www.steletch.org/spip.php?rubrique4
http://fsffrance.org/science/chimie.fr.html
http://www.alchem.org/
http://www.alchem.org/list.php3?id_rubrique=2 [fr] list of software
----
CategoryCookerDev
Deletions:
http://www.caelinux.com/CMS/index.php?option=com_simpleboard


Revision [1405]

Edited on 2007-06-28 19:14:31 by LdfNmi [spam]
Additions:
http://www.caelinux.com/CMS/index.php?option=com_simpleboard
Deletions:
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=232&catid=2 [en] many suggestions of programs, being sorted
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=218&catid=2 [en] some have been included
see CAELinuxSuggestions
https://www.scientificlinux.org/ distribution for scientific use, based on RHEL4
https://www.scientificlinux.org/distributions/4x/40/sl.release.note.40.i386 not much added :/ (openafs, mp3, ...) at least it permit to have a standard base
===presentation of products===
http://ceu.fi.udc.es/SAL/index.shtml SAL (Scientific Applications on Linux) is a collection of information and links to software that will be of interest to scientists and engineers. The broad coverage of Linux applications will also benefit the whole Linux/Unix community. There are currently 2,965 entries in SAL
http://ceu.fi.udc.es/SAL/B/index.shtml [en] list of Numerical Analysis programs
http://ceu.fi.udc.es/SAL/Z/2/index.shtml [en] list of chemical/biological software
http://savannah.fzk.de/ a german forge with scientific software (using grid)

http://www.gnu.org/software/gsl/ to be checked : programs based on gnu scientific library (maybe not all are packaged ?)
http://wiki.debian.org/DebianScienceDataPlotting plot programs in debian (or not)
http://zaimi.free.fr/informatique/ [fr] list of many programs
http://82.231.148.189/dokuwiki/doku.php?id=doc:veille:ingenierie [fr]
http://www-math.univ-fcomte.fr/pp_Annu/DCALUGARU/liens.php [fr]
http://ubunpingoo.tuxfamily.org/doku.php?id=installation_rapide_de_logiciels_utilisables_en_milieu_educatif [fr] many programs for science
http://www.aiaa-houston.org/newsletter/jan06/jan06.pdf [en] review of astronautics with octave, maxima, flight gear, ""IT++"", ode, openscenegraph
http://www.archilinux.org/archi-cao/archi-cao.html [fr] some programs either free or non-free for CAD, import autocad files in blender
http://www.tech-edv.co.at/lunix/CADlinks.html [en] table identifying CAD software for Linux with license type / source code provided / binary packages
http://www.tech-edv.co.at/lunix/UTILlinks.html [en] CAD/3d Utilities Links
http://www.tech-edv.co.at/lunix/MODlinks.html [en] Linux Modelers Links
http://www.evl.uic.edu/cavern/sage/applications.php Scalable Adaptive Graphics Environment (to be checked)
http://www.librecours.org/cgi-bin/main?callback=presentation [fr]
https://lipforge.ens-lyon.fr/softwaremap/trove_list.php
http://gforge.inria.fr/softwaremap/trove_list.php
http://www.inria.fr/valorisation/logiciels/calcul.fr.html
http://norma.mas.ecp.fr/wikimas/ScientificComputingSoftware [en] lots of sofware, some with a F/OSS license
http://www.loria.fr/software/tous?license=free&theme=all&search_string= [fr] list of sofware with free license
http://www.csc.fi/suomi/hakemisto/sovelluslista/ohjelmistot.html.en [en] Application software and databases at CSC (check what is free)
http://sw-tools.pdb.org/apps/MAXIT/index.html maxit Program Suite was developed by the PDB (Protein Data Bank) and NDB (Nucleic Acid Database) to assist in the processing and curation of macromolecular structure data
http://gersoo.free.fr/calsci/calsci1.html [fr] long list of products (either free software or sometimes not)
http://techer.pascal.free.fr/postgis/ [fr] geographic information systems (postgres with spatial options)
http://freshmeat.net/projects/aisee/ Free for non-commercial use graph browser which supports 15 layout algorithms, recursive graph nesting and easy printing
http://freshmeat.net/projects/siptoolbox/ scigraphica
http://luke.no-ip.org/code/ [en] many programs, some about fractals or open GL...
http://luke.no-ip.org/code/kueye/

http://g3d-cpp.sourceforge.net/ commercial-grade 3D Engine available as Open Source (BSD License). It is used in games, tech demos, research papers, military simulators, and university courses. It can support real-time rendering, off-line rendering, back-end game server management of 3D worlds, and use of graphics hardware for general purpose computing.
http://freshmeat.net/browse/97/
http://freshmeat.net/projects/ghemical/ A molecular modelling package with GUI and 3D-visualization tools.
http://freshmeat.net/projects/gmsh/ A 3D finite element mesh generator with built-in CAD engine and post-processor.
http://freshmeat.net/projects/visit/ Software for scientific visualization and analysis.
http://www.mathtools.net/ [en] many programs, most of them proprietary after a quick glance :-(
http://sourceforge.net/projects/elisa an open ""C++"" library for constraint programming and constraint solving techniques (requires gaol)
http://sourceforge.net/projects/gaol ""C++"" library for interval arithmetic (RPMs are available - requires IBM mathlib)
===List of existing packages or programs===
Those are lists of programs for GNU/Linux, which may be already packaged.
http://club.mandriva.com/xwiki/bin/KB/SciApps
http://rpms.mandrivaclub.com/rpms/Groups.html see http://rpms.mandrivaclub.com/rpms/Sciences_Mathematics.html and others in Sciences/you name it...
http://packages.ubuntu.com/breezy/math/
http://www.freshports.org/math/ ports for ""FreeBSD""
http://www.biolinux.org/soft.html rpm packages for biology => verify whether they are in plf or contrib
http://www.usinglinux.org/science/
http://www.jesuislibre.org/applications/Scientifique_et_Technique/ [fr] many programs to verify
http://repos.opensuse.org/science/SUSE_Factory/repodata/ a repository dedicated to Software for Scientists and Engineers (SUSE_Factory)
http://www.eso.org/science/scisoft/ packaging of astronomical software
http://www.eso.org/science/scisoft/rpm2html/Applications_Scientific.html
===Programs with packages available===
Those programs could be included either in main or in contrib, only need a maintainer and adaptation of spec file
http://calculix.de/ (GPL) Three-Dimensional Structural Finite Element Program
http://www.dhondt.de/ to download calculix
http://www.colorfullife.com/~manfred/ccx/ rpm are available
see TestCalculix
http://sourceforge.net/projects/apbs - [ [[http://sourceforge.net/project/screenshots.php?group_id=148472 screenshots]] ] (GPL) software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales
http://sourceforge.net/project/showfiles.php?group_id=148472 rpm are available
see CompileApbs
verify if this is obsoleted by what provides apbs...
http://www.fetk.org/ ""The Finite Element ToolKit (FEtk)"" is an evolving collection of parallel adaptive multilevel finite element software libraries and tools for solving coupled systems of partial differential equations (PDE) and integral equations (IE)
http://cam.ucsd.edu/~mholst/codes/maloc/index.html (GPL) MALOC (Minimal Abstraction Layer for Object-oriented C) is a small, portable, abstract C environment library for object-oriented C programming
http://cam.ucsd.edu/~mholst/codes/maloc/index.html#download rpm are available
http://cam.ucsd.edu/~mholst/codes/mc/index.html hum missing the downloading links :-(
http://cam.ucsd.edu/~mholst/codes/sg/index.html (GPL) SG is an unstructured simplex mesh OpenGL display and manipulation tool for use with the finite element research codes MC and PLTMG
http://cam.ucsd.edu/~mholst/codes/sg/index.html#download rpm are available
verify if this is obsoleted by what provides apbs...
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html (GPL) ""calcul formel, de la géométrie dynamique, du tableur et de la programmation. Xcas est une interface de Giac, une bibliothèque C++ de calcul formel libre (licence GPL). Giac dispose d'un mode de compatibilité avec les logiciels Maple et MuPAD et les calculatrices TI89/TI92/Voyage 200""
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html#packages debian packages available
http://www.math.u-bordeaux.fr/~belabas/pari/ PARI/GP computer algebra system designed for fast computations in number theory (factorizations, algebraic number theory, elliptic curves...)
http://modular.fas.harvard.edu/SAGE/ a graphical interface
===Programs not yet packaged===
Have a look at those programs, check license and whether packages (deb, rpm, ...) would be available
http://www2.enel.ucalgary.ca/~vigmond/flounder/ - Flounder is a quick way to visualize regularly spaced 4D data, i.e., a data set that is a function of x, y, z, and time.
http://cocoa.dima.unige.it/ (public domain) Computations in Commutative Algebra
http://www.gap-system.org (GPL) GAP is a system for computational discrete algebra, with particular emphasis on Computational Group Theory.
http://home.gna.org/mipisti/ (GPL) ""MicroscopePictureStitching (MiPiSti)"" arrange charts to one overall picture
https://gna.org/projects/mipisti project page
https://gna.org/projects/mini3d/ (GPL) mini3d is a set of basic tools for exporting/importing 3d mesh. This lib provide read/write 3d mesh in 3ds ascii format (.asc)
https://gna.org/projects/micromodel/ (GPL) ""This MicroModel library is about modeling low polycount 3d models. A visual mouse driven modeler is featured to help building models.""
http://cvs.gna.org/cvsweb/?cvsroot=micromodel cvs
https://gna.org/projects/metafract/ (GPL) Metafract is an all-purpose fractal generator using GTK+2.
http://svn.gna.org/viewcvs/metafract/trunk/ svn
http://www.decade-dynamics.org/ (GPL) Decade is an acronym for Dynamic Engine for Computer Aided DEsign software. It aims to provide a full dynamic engine for simulating rigid body. Decade can work as a standalone tool, as well as an extension for CATIA V5 and SolidWorks CAD softwares.
https://gna.org/projects/decade/ project page
http://download.gna.org/decade/ download
https://gna.org/projects/haplo/ (GPL) a finite element program
http://download.gna.org/haplo/debian/ debian packages
http://www.swox.com/gmp/ (LGPL) GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. There is no practical limit to the precision except the ones implied by the available memory in the machine GMP runs on. GMP has a rich set of functions, and the functions have a regular interface.
http://www.opencfd.co.uk/ (GPL) computational fluid dynamics (CFD) Open FOAM (Open Field Operation and Manipulation) CFD Toolbox can simulate anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics, electromagnetics and the pricing of financial options
http://freshmeat.net/projects/openfoam/ license : GPL
http://gfs.sourceforge.net/ - [ [[http://gfs.sourceforge.net/gallery.html screenshots]] ] (GPL) library for the solution of the partial differential equations describing fluid flow
http://www.geuz.org/getdp/ (GPL) ""GetDP"" has been initially developed in the field of computational electromagnetics, general finite element solver using mixed elements to discretize de Rham-type complexes in one, two and three dimensions
http://www.geuz.org/gmsh/ - [ [[http://www.geuz.org/gmsh/#Screenshots screenshots]] ] (GPL) Gmsh is a three-dimensional finite element mesh generator with built-in pre- and post-processing facilities
http://www.hpfem.jku.at/netgen/index.html - [ [[http://www.hpfem.jku.at/netgen/index.html?/netgen/screenshots.html screenshots]] ] (LGPL) Netgen is an automatic 3d tetrahedral mesh generator
http://www.hpfem.jku.at/ngsolve/index.html (LGPL) NGSolve is a general purpose 3D finite element solver. Version 1.x supports scalar (heat flow), elasticity and magnetic field problems.
http://www.opencascade.org/ - [ [[http://www.opencascade.org/showroom/screenshots/ screenshots]] ] ([[http://www.opencascade.org/occ/license/ LGPL-like]]) Open CASCADE is a powerful CAD/CAM/CAE kernel and development platform for 3D modeling applications
http://www.mit.edu/~ibaran/kseg.html [en] GPL Geometry
http://www.stat.umn.edu/macanova/macanova.home.html [en] GPL interactive statistical analysis program
http://socnetv.sourceforge.net/ [en] GPL comprehensive Social Networks Analysis and Visualisation
http://eye.jimbomania.com/eyefract.html [en] maybe-GPL
http://jimbomania.com/glfract.html [en] GPL loads fractal {Mandelbrot, Julia} sets from file as specified by David Eyerman's Eyefract v0.6.0 and displays them in 3D space with ""OpenGL/Glut""
http://spike.sandia.gov/Trilinos/about.html Project Trilinos effort to develop and implement robust parallel algorithms using modern object-oriented software design, while still leveraging the value of established numerical libraries such as PETSc, Aztec, the BLAS and LAPACK.
http://www.ap-i.net/skychart/modules.php?op=modload&name=PagEd&file=index&page_id=18 [fr] cartes du ciel (skychart), compiles with lazarus free pascal
http://www.wings3d.com/index.php [en] Wings 3D is a subdivision modeler BSD, developed in erlang :-(
http://home.fnal.gov/~gnedin/IFRIT/ - [ [[http://home.fnal.gov/~gnedin/IFRIT/intro_shots.html screenshots]] ] (Public Domain) powerful tool that can be used to visualize 3-dimensional data sets
http://www.ncnr.nist.gov/xtal/software/gsas.html (BSD-like) GSAS (General Structure Analysis System) is a comprehensive system for the refinement of structural models to both x-ray and neutron diffraction data. The GSAS package can be used with both single-crystal and powder diffraction data (Rietveld analysis) -- TagScara
http://www.ncnr.nist.gov/programs/crystallography/software/expgui/expgui.html Public Domain tcl/tk EXPGUI is a GUI for GSAS
http://jsynoptic.sourceforge.net/ (LGPL) JSynoptic renders information graphically. It can be used as a simple graph plotter, or as a complex run-time monitoring environment
http://jsynoptic.sourceforge.net/screenshots.html
http://sourceforge.net/projects/jsynoptic/ Java
http://jcae.sourceforge.net/ (LGPL) # simple volumes modeler # finite elements mesher # portable on platforms which support Java and Opencascade
http://jcae.sourceforge.net/screenshots.html
http://www.sourceforge.net/projects/jcae Java
http://consult.cern.ch/writeup/garfield/files/ (no license found) Garfield is a computer program for the detailed simulation of two- and three-dimensional drift chambers.
===software that seems not free===
to be looked at later... even though they seem open source (OSI) approved. Non-commercial is a severe restriction :-(
http://femm.foster-miller.net/index.html A Windows finite element solver for 2D and axisymmetric magnetic and electrostatic problems with graphical pre- and post-processors.
http://femm.foster-miller.net/Archives/license.htm not a free license (cannot charge)
http://femm.foster-miller.net/Archives/linux/readme.htm runs in wine :-(
http://www.dealii.org/ - [[http://www.dealii.org/developer/license.html QPL licensing]] The main aim of deal.II is to enable development of modern finite element algorithms, using among other aspects sophisticated error estimators and adaptive meshes.
http://www.informatik.tu-darmstadt.de/TI/LiDIA/ - [[ftp://ftp.informatik.tu-darmstadt.de/pub/TI/systems/LiDIA/current/COPYING non-commercial license]] A ""C++"" Library For Computational Number Theory
http://www.ill.fr/pages/science/IGroups/diff/Soft/fp/index.html - [[ license to be found]] ""a set of crystallographic programs (FullProf, WinPLOTR, EdPCR, GFourier, etc...) mainly developed for Rietveld analysis (structure profile refinement) of neutron (constant wavelength, time of flight, nuclear and magnetic scattering) or X-ray powder diffraction data collected at constant or variable step in scattering angle 2theta."" -- TagScara
http://www-llb.cea.fr/fullweb/fp2k/fp2k_intro_whatis.htm brief presentation
http://www.ill.fr/pages/science/IGroups/diff/Soft/fp/php/downloads.html (last version when checked : June 2006)
http://www-llb.cea.fr/fullweb/fp2k/fp2k.htm (dates back to january 2003 ?)
http://www-llb.cea.fr/fullweb/others/jfullprof.htm jfullprof (java interface)
===Compilations of programs===
for programs that have not yet been packaged and that I try to get compiled see CompilePrograms
CompileElmer GPL tool using finite element method for multi-physics problems (compiles with g95 fortran ""gcc-c++"" ...)
TestCalculix GPL tool
TestScilab non-free license (non-commercial) tool for many scientific problems
===For Scara===
http://openscientist.lal.in2p3.fr/
http://wikiomics.org/wiki/Main_Page
http://www.openscience.org/links/index.php?section=21
http://pgopher.chm.bris.ac.uk/
http://www.steletch.org/spip.php?rubrique4
http://fsffrance.org/science/chimie.fr.html
http://www.alchem.org/
http://www.alchem.org/list.php3?id_rubrique=2 [fr] list of software
----
CategoryCookerDev


Revision [1354]

Edited on 2007-05-17 17:30:28 by BenoitAudouard [spam]
Additions:
http://savannah.fzk.de/ a german forge with scientific software (using grid)


Revision [1258]

Edited on 2007-05-08 15:56:20 by BenoitAudouard [spam]
Additions:
http://82.231.148.189/dokuwiki/doku.php?id=doc:veille:ingenierie [fr]
http://www-math.univ-fcomte.fr/pp_Annu/DCALUGARU/liens.php [fr]


Revision [1257]

Edited on 2007-05-08 03:22:09 by BenoitAudouard [spam]
Additions:
http://zaimi.free.fr/informatique/ [fr] list of many programs


Revision [1163]

Edited on 2007-04-28 01:41:54 by BenoitAudouard [spam]
Deletions:


Revision [1162]

Edited on 2007-04-28 01:41:22 by BenoitAudouard [spam]
Additions:
http://www.gnu.org/software/gsl/ to be checked : programs based on gnu scientific library (maybe not all are packaged ?)


Revision [1146]

Edited on 2007-03-25 01:34:52 by BaudAdmin [spam]
Additions:
http://fsffrance.org/science/chimie.fr.html
http://www.alchem.org/
http://www.alchem.org/list.php3?id_rubrique=2 [fr] list of software


Revision [1145]

Edited on 2007-03-25 01:27:00 by BaudAdmin [spam]
Additions:
http://www.steletch.org/spip.php?rubrique4


Revision [1144]

Edited on 2007-03-25 01:26:18 by BaudAdmin [spam]
Additions:
http://www2.enel.ucalgary.ca/~vigmond/flounder/ - Flounder is a quick way to visualize regularly spaced 4D data, i.e., a data set that is a function of x, y, z, and time.
===For Scara===
http://openscientist.lal.in2p3.fr/
http://wikiomics.org/wiki/Main_Page
http://www.openscience.org/links/index.php?section=21
http://pgopher.chm.bris.ac.uk/


Revision [1124]

Edited on 2007-03-17 17:20:58 by BenoitAudouard [spam]
Additions:
----
CategoryCookerDev


Revision [1116]

Edited on 2007-03-16 21:02:00 by BenoitAudouard [add biology]
Additions:
http://ceu.fi.udc.es/SAL/B/index.shtml [en] list of Numerical Analysis programs
http://ceu.fi.udc.es/SAL/Z/2/index.shtml [en] list of chemical/biological software
Deletions:
http://ceu.fi.udc.es/SAL/B/index.shtml [en] list of Numerical Analysis programs


Revision [1115]

Edited on 2007-03-16 20:59:05 by BenoitAudouard [add SAL scientific applications on Linux]
Additions:
http://ceu.fi.udc.es/SAL/B/index.shtml [en] list of Numerical Analysis programs
http://ceu.fi.udc.es/SAL/index.shtml SAL (Scientific Applications on Linux) is a collection of information and links to software that will be of interest to scientists and engineers. The broad coverage of Linux applications will also benefit the whole Linux/Unix community. There are currently 2,965 entries in SAL


Revision [1092]

Edited on 2007-03-08 16:43:59 by BenoitAudouard [add SAL scientific applications on Linux]
Additions:
http://wiki.debian.org/DebianScienceDataPlotting plot programs in debian (or not)


Revision [1085]

Edited on 2007-02-09 01:17:00 by BaudAdmin [add cocoa & gap]
Additions:
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html (GPL) ""calcul formel, de la géométrie dynamique, du tableur et de la programmation. Xcas est une interface de Giac, une bibliothèque C++ de calcul formel libre (licence GPL). Giac dispose d'un mode de compatibilité avec les logiciels Maple et MuPAD et les calculatrices TI89/TI92/Voyage 200""
http://cocoa.dima.unige.it/ (public domain) Computations in Commutative Algebra
http://www.gap-system.org (GPL) GAP is a system for computational discrete algebra, with particular emphasis on Computational Group Theory.
Deletions:
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html (GPL) calcul formel, de la géométrie dynamique, du tableur et de la programmation. Xcas est une interface de Giac, une bibliothèque C++ de calcul formel libre (licence GPL). Giac dispose d'un mode de compatibilité avec les logiciels Maple et MuPAD et les calculatrices TI89/TI92/Voyage 200


Revision [1078]

Edited on 2007-01-15 18:26:00 by BenoitAudouard [add BSD ports]
Additions:
http://www.freshports.org/math/ ports for ""FreeBSD""


Revision [1064]

Edited on 2006-12-30 19:28:52 by BenoitAudouard [add BSD ports]
Additions:
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html (GPL) calcul formel, de la géométrie dynamique, du tableur et de la programmation. Xcas est une interface de Giac, une bibliothèque C++ de calcul formel libre (licence GPL). Giac dispose d'un mode de compatibilité avec les logiciels Maple et MuPAD et les calculatrices TI89/TI92/Voyage 200
http://www-fourier.ujf-grenoble.fr/~parisse/giac_fr.html#packages debian packages available
http://www.math.u-bordeaux.fr/~belabas/pari/ PARI/GP computer algebra system designed for fast computations in number theory (factorizations, algebraic number theory, elliptic curves...)
http://modular.fas.harvard.edu/SAGE/ a graphical interface


Revision [1023]

Edited on 2006-12-08 14:42:16 by BaudAdmin [add scisoft]
Additions:
http://www.eso.org/science/scisoft/ packaging of astronomical software
http://www.eso.org/science/scisoft/rpm2html/Applications_Scientific.html


Revision [970]

Edited on 2006-11-30 16:24:04 by BenoitAudouard [add suse factory]
Additions:
Those are lists of programs for GNU/Linux, which may be already packaged.
http://repos.opensuse.org/science/SUSE_Factory/repodata/ a repository dedicated to Software for Scientists and Engineers (SUSE_Factory)
Deletions:
Those are lists of programs for GNU/Linux, which may be already packaged


Revision [968]

Edited on 2006-11-12 15:38:01 by BenoitAudouard [add suse factory]
Additions:
http://www.loria.fr/software/tous?license=free&theme=all&search_string= [fr] list of sofware with free license


Revision [967]

Edited on 2006-11-12 15:07:56 by BenoitAudouard [add suse factory]
Additions:
http://norma.mas.ecp.fr/wikimas/ScientificComputingSoftware [en] lots of sofware, some with a F/OSS license


Revision [966]

Edited on 2006-11-12 14:56:09 by BenoitAudouard [add suse factory]
Additions:
http://www.inria.fr/valorisation/logiciels/calcul.fr.html


Revision [866]

Edited on 2006-10-02 00:34:44 by BenoitAudouard [add suse factory]
Additions:
https://gna.org/projects/metafract/ (GPL) Metafract is an all-purpose fractal generator using GTK+2.
http://svn.gna.org/viewcvs/metafract/trunk/ svn


Revision [865]

Edited on 2006-10-02 00:33:22 by BenoitAudouard [add suse factory]
Additions:
http://home.gna.org/mipisti/ (GPL) ""MicroscopePictureStitching (MiPiSti)"" arrange charts to one overall picture
https://gna.org/projects/mipisti project page
https://gna.org/projects/mini3d/ (GPL) mini3d is a set of basic tools for exporting/importing 3d mesh. This lib provide read/write 3d mesh in 3ds ascii format (.asc)
https://gna.org/projects/micromodel/ (GPL) ""This MicroModel library is about modeling low polycount 3d models. A visual mouse driven modeler is featured to help building models.""
http://cvs.gna.org/cvsweb/?cvsroot=micromodel cvs


Revision [863]

Edited on 2006-09-30 20:08:13 by BenoitAudouard [add haplo]
Additions:
https://gna.org/projects/haplo/ (GPL) a finite element program
http://download.gna.org/haplo/debian/ debian packages


Revision [858]

Edited on 2006-09-30 19:27:25 by BenoitAudouard [add haplo]
Deletions:


Revision [857]

Edited on 2006-09-30 19:26:56 by BenoitAudouard [add decade]
Additions:
http://www.decade-dynamics.org/ (GPL) Decade is an acronym for Dynamic Engine for Computer Aided DEsign software. It aims to provide a full dynamic engine for simulating rigid body. Decade can work as a standalone tool, as well as an extension for CATIA V5 and SolidWorks CAD softwares.
https://gna.org/projects/decade/ project page
http://download.gna.org/decade/ download


Revision [350]

Edited on 2006-07-25 22:37:52 by BenoitAudouard [add gmp]
Additions:
http://www.swox.com/gmp/ (LGPL) GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. There is no practical limit to the precision except the ones implied by the available memory in the machine GMP runs on. GMP has a rich set of functions, and the functions have a regular interface.


Revision [349]

Edited on 2006-07-20 02:25:53 by BenoitAudouard [add TagScara for gsas]
Additions:
http://www.ncnr.nist.gov/xtal/software/gsas.html (BSD-like) GSAS (General Structure Analysis System) is a comprehensive system for the refinement of structural models to both x-ray and neutron diffraction data. The GSAS package can be used with both single-crystal and powder diffraction data (Rietveld analysis) -- TagScara
Deletions:
http://www.ncnr.nist.gov/xtal/software/gsas.html (BSD-like) GSAS (General Structure Analysis System) is a comprehensive system for the refinement of structural models to both x-ray and neutron diffraction data. The GSAS package can be used with both single-crystal and powder diffraction data (Rietveld analysis)


Revision [348]

Edited on 2006-07-20 02:24:26 by BenoitAudouard [add TagScara for gsas]
Additions:
http://www-llb.cea.fr/fullweb/fp2k/fp2k_intro_whatis.htm brief presentation
http://www-llb.cea.fr/fullweb/others/jfullprof.htm jfullprof (java interface)
Deletions:
http://www-llb.cea.fr/fullweb/others/jfullprof.htm jfullprof


Revision [347]

Edited on 2006-07-20 02:13:13 by BenoitAudouard [add FullProf]
Additions:
http://www.ill.fr/pages/science/IGroups/diff/Soft/fp/index.html - [[ license to be found]] ""a set of crystallographic programs (FullProf, WinPLOTR, EdPCR, GFourier, etc...) mainly developed for Rietveld analysis (structure profile refinement) of neutron (constant wavelength, time of flight, nuclear and magnetic scattering) or X-ray powder diffraction data collected at constant or variable step in scattering angle 2theta."" -- TagScara
http://www.ill.fr/pages/science/IGroups/diff/Soft/fp/php/downloads.html (last version when checked : June 2006)
http://www-llb.cea.fr/fullweb/fp2k/fp2k.htm (dates back to january 2003 ?)
http://www-llb.cea.fr/fullweb/others/jfullprof.htm jfullprof


Revision [346]

Edited on 2006-07-09 10:16:12 by BenoitAudouard [add FullProf]
Additions:
===science-related GNU/Linux distributions===
https://www.scientificlinux.org/distributions/4x/40/sl.release.note.40.i386 not much added :/ (openafs, mp3, ...) at least it permit to have a standard base
http://sourceforge.net/projects/elisa an open ""C++"" library for constraint programming and constraint solving techniques (requires gaol)
http://sourceforge.net/projects/gaol ""C++"" library for interval arithmetic (RPMs are available - requires IBM mathlib)
===List of existing packages or programs===
Those are lists of programs for GNU/Linux, which may be already packaged
http://www.usinglinux.org/science/
http://calculix.de/ (GPL) Three-Dimensional Structural Finite Element Program
see TestCalculix
Deletions:
https://www.scientificlinux.org/distributions/4x/40/sl.release.note.40.i386 not much added :/ (openafs, mp3, ...) at least it permit to have a standard base
http://sourceforge.net/projects/elisa an open C""++"" library for constraint programming and constraint solving techniques (requires gaol)
http://sourceforge.net/projects/gaol C""++"" library for interval arithmetic (RPMs are available - requires IBM mathlib)
===List of existing packages===
http://calculix.de/ (GPL) Three-Dimensional Structural Finite Element Program TestCalculix


Revision [344]

Edited on 2006-07-08 12:39:46 by BenoitAudouard [add FullProf]
Additions:
https://www.scientificlinux.org/ distribution for scientific use, based on RHEL4
https://www.scientificlinux.org/distributions/4x/40/sl.release.note.40.i386 not much added :/ (openafs, mp3, ...) at least it permit to have a standard base


Revision [342]

Edited on 2006-06-26 02:36:57 by BenoitAudouard [add FullProf]
Additions:
http://ubunpingoo.tuxfamily.org/doku.php?id=installation_rapide_de_logiciels_utilisables_en_milieu_educatif [fr] many programs for science


Revision [333]

Edited on 2006-06-22 02:41:09 by BenoitAudouard [add FullProf]
Additions:
http://www.tech-edv.co.at/lunix/UTILlinks.html [en] CAD/3d Utilities Links
http://www.tech-edv.co.at/lunix/MODlinks.html [en] Linux Modelers Links


Revision [332]

Edited on 2006-06-22 02:35:54 by BenoitAudouard [add FullProf]
Additions:
http://www.tech-edv.co.at/lunix/CADlinks.html [en] table identifying CAD software for Linux with license type / source code provided / binary packages


Revision [331]

Edited on 2006-06-22 02:07:41 by BenoitAudouard [add FullProf]
Additions:
http://www.archilinux.org/archi-cao/archi-cao.html [fr] some programs either free or non-free for CAD, import autocad files in blender


Revision [326]

Edited on 2006-06-20 01:12:55 by BenoitGuedas [add FullProf]
Additions:
http://sourceforge.net/projects/gaol C""++"" library for interval arithmetic (RPMs are available - requires IBM mathlib)
Deletions:
http://sourceforge.net/projects/gaol C""++"" library for interval arithmetic (rpm are available - requires IBM mathlib)


Revision [325]

Edited on 2006-06-20 01:12:30 by BenoitGuedas [add FullProf]
Additions:
http://sourceforge.net/projects/gaol C""++"" library for interval arithmetic (rpm are available - requires IBM mathlib)
Deletions:
http://sourceforge.net/projects/gaol C""++"" library for interval arithmetic


Revision [324]

Edited on 2006-06-20 01:03:59 by BenoitGuedas [add FullProf]
Additions:
http://sourceforge.net/projects/elisa an open C""++"" library for constraint programming and constraint solving techniques (requires gaol)
http://sourceforge.net/projects/gaol C""++"" library for interval arithmetic
Deletions:
http://sourceforge.net/projects/elisa an open C++ library for constraint programming and constraint solving techniques (requires gaol)
http://sourceforge.net/projects/gaol C++ library for interval arithmetic


Revision [323]

Edited on 2006-06-20 01:01:47 by BenoitGuedas [add FullProf]
Additions:
http://sourceforge.net/projects/elisa an open C++ library for constraint programming and constraint solving techniques (requires gaol)
http://sourceforge.net/projects/gaol C++ library for interval arithmetic


Revision [315]

Edited on 2006-06-11 02:59:44 by BenoitAudouard [add FullProf]
Additions:
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=232&catid=2 [en] many suggestions of programs, being sorted
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=218&catid=2 [en] some have been included
see CAELinuxSuggestions
Deletions:
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=232&catid=2 [en] many suggestions of programs, being sorted CAELinuxSuggestions


Revision [314]

Edited on 2006-06-11 02:58:41 by BenoitAudouard [add FullProf]
Additions:
once a program is chosen see CompilePrograms to add compilation / tests / screenshots... see PresentationScientificPackaging to see how to contribute and get numerous other scientific programs included in public distributions.
Deletions:
once a program is chosen see CompilePrograms to add compilation / tests / screenshots...


Revision [276]

Edited on 2006-05-19 13:03:58 by BenoitAudouard [add FullProf]
Additions:
once a program is chosen see CompilePrograms to add compilation / tests / screenshots...
Deletions:
once a program is chosen see CompilePrograms


Revision [275]

Edited on 2006-05-19 13:03:32 by BenoitAudouard [add FullProf]
Additions:
once a program is chosen see CompilePrograms


Revision [259]

Edited on 2006-05-01 00:20:04 by BenoitAudouard [add FullProf]
Additions:
http://www.informatik.tu-darmstadt.de/TI/LiDIA/ - [[ftp://ftp.informatik.tu-darmstadt.de/pub/TI/systems/LiDIA/current/COPYING non-commercial license]] A ""C++"" Library For Computational Number Theory
Deletions:
http://www.informatik.tu-darmstadt.de/TI/LiDIA/ - [[ftp://ftp.informatik.tu-darmstadt.de/pub/TI/systems/LiDIA/current/COPYING non-commercial license]] A C++ Library For Computational Number Theory


Revision [250]

Edited on 2006-04-17 16:01:02 by BenoitAudouard [add FullProf]
Additions:
see CompileApbs


Revision [248]

Edited on 2006-04-17 04:48:18 by BenoitAudouard [add FullProf]
Additions:
http://www.evl.uic.edu/cavern/sage/applications.php Scalable Adaptive Graphics Environment (to be checked)


Revision [247]

Edited on 2006-04-17 04:31:12 by BenoitAudouard [add FullProf]
Additions:
verify if this is obsoleted by what provides apbs...
http://cam.ucsd.edu/~mholst/codes/sg/index.html (GPL) SG is an unstructured simplex mesh OpenGL display and manipulation tool for use with the finite element research codes MC and PLTMG
http://cam.ucsd.edu/~mholst/codes/sg/index.html#download rpm are available
verify if this is obsoleted by what provides apbs...
Deletions:


Revision [246]

Edited on 2006-04-17 02:38:16 by BenoitAudouard [add FullProf]
Additions:
http://cam.ucsd.edu/~mholst/codes/mc/index.html hum missing the downloading links :-(


Revision [245]

Edited on 2006-04-17 01:58:07 by BenoitAudouard [add FullProf]
Additions:
http://www.fetk.org/ ""The Finite Element ToolKit (FEtk)"" is an evolving collection of parallel adaptive multilevel finite element software libraries and tools for solving coupled systems of partial differential equations (PDE) and integral equations (IE)
Deletions:
http://www.fetk.org/ The Finite Element ToolKit (FEtk) is an evolving collection of parallel adaptive multilevel finite element software libraries and tools for solving coupled systems of partial differential equations (PDE) and integral equations (IE)


Revision [244]

Edited on 2006-04-17 01:37:21 by BenoitAudouard [add FullProf]
Additions:
http://sourceforge.net/projects/apbs - [ [[http://sourceforge.net/project/screenshots.php?group_id=148472 screenshots]] ] (GPL) software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales
http://sourceforge.net/project/showfiles.php?group_id=148472 rpm are available
http://www.fetk.org/ The Finite Element ToolKit (FEtk) is an evolving collection of parallel adaptive multilevel finite element software libraries and tools for solving coupled systems of partial differential equations (PDE) and integral equations (IE)
http://cam.ucsd.edu/~mholst/codes/maloc/index.html (GPL) MALOC (Minimal Abstraction Layer for Object-oriented C) is a small, portable, abstract C environment library for object-oriented C programming
http://cam.ucsd.edu/~mholst/codes/maloc/index.html#download rpm are available


Revision [229]

Edited on 2006-04-10 01:42:49 by BenoitAudouard [add FullProf]
Additions:
http://www.mathtools.net/ [en] many programs, most of them proprietary after a quick glance :-(
to be looked at later... even though they seem open source (OSI) approved. Non-commercial is a severe restriction :-(
http://www.dealii.org/ - [[http://www.dealii.org/developer/license.html QPL licensing]] The main aim of deal.II is to enable development of modern finite element algorithms, using among other aspects sophisticated error estimators and adaptive meshes.
http://www.informatik.tu-darmstadt.de/TI/LiDIA/ - [[ftp://ftp.informatik.tu-darmstadt.de/pub/TI/systems/LiDIA/current/COPYING non-commercial license]] A C++ Library For Computational Number Theory
Deletions:
to be looked at later...


Revision [198]

Edited on 2006-04-05 14:16:04 by BenoitAudouard [add FullProf]
Additions:
http://calculix.de/ (GPL) Three-Dimensional Structural Finite Element Program TestCalculix
http://www.opencfd.co.uk/ (GPL) computational fluid dynamics (CFD) Open FOAM (Open Field Operation and Manipulation) CFD Toolbox can simulate anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics, electromagnetics and the pricing of financial options
http://gfs.sourceforge.net/ - [ [[http://gfs.sourceforge.net/gallery.html screenshots]] ] (GPL) library for the solution of the partial differential equations describing fluid flow
http://www.geuz.org/getdp/ (GPL) ""GetDP"" has been initially developed in the field of computational electromagnetics, general finite element solver using mixed elements to discretize de Rham-type complexes in one, two and three dimensions
http://www.geuz.org/gmsh/ - [ [[http://www.geuz.org/gmsh/#Screenshots screenshots]] ] (GPL) Gmsh is a three-dimensional finite element mesh generator with built-in pre- and post-processing facilities
http://www.hpfem.jku.at/netgen/index.html - [ [[http://www.hpfem.jku.at/netgen/index.html?/netgen/screenshots.html screenshots]] ] (LGPL) Netgen is an automatic 3d tetrahedral mesh generator
http://www.hpfem.jku.at/ngsolve/index.html (LGPL) NGSolve is a general purpose 3D finite element solver. Version 1.x supports scalar (heat flow), elasticity and magnetic field problems.
http://www.opencascade.org/ - [ [[http://www.opencascade.org/showroom/screenshots/ screenshots]] ] ([[http://www.opencascade.org/occ/license/ LGPL-like]]) Open CASCADE is a powerful CAD/CAM/CAE kernel and development platform for 3D modeling applications
http://home.fnal.gov/~gnedin/IFRIT/ - [ [[http://home.fnal.gov/~gnedin/IFRIT/intro_shots.html screenshots]] ] (Public Domain) powerful tool that can be used to visualize 3-dimensional data sets
http://www.ncnr.nist.gov/xtal/software/gsas.html (BSD-like) GSAS (General Structure Analysis System) is a comprehensive system for the refinement of structural models to both x-ray and neutron diffraction data. The GSAS package can be used with both single-crystal and powder diffraction data (Rietveld analysis)
Deletions:
http://calculix.de/ Three-Dimensional Structural Finite Element Program (GPL) TestCalculix
http://www.opencfd.co.uk/ computational fluid dynamics (CFD) Open FOAM (Open Field Operation and Manipulation) CFD Toolbox can simulate anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics, electromagnetics and the pricing of financial options
http://gfs.sourceforge.net/ - [ [[http://gfs.sourceforge.net/gallery.html screenshots]] ] GPL library for the solution of the partial differential equations describing fluid flow
http://www.geuz.org/getdp/ ""GetDP"" has been initially developed in the field of computational electromagnetics, general finite element solver using mixed elements to discretize de Rham-type complexes in one, two and three dimensions (GPL)
http://www.geuz.org/gmsh/ Gmsh is a three-dimensional finite element mesh generator with built-in pre- and post-processing facilities (GPL)
http://www.hpfem.jku.at/netgen/index.html Netgen is an automatic 3d tetrahedral mesh generator - LGPL - [ [[http://www.hpfem.jku.at/netgen/index.html?/netgen/screenshots.html screenshots]] ]
http://www.hpfem.jku.at/ngsolve/index.html NGSolve is a general purpose 3D finite element solver. Version 1.x supports scalar (heat flow), elasticity and magnetic field problems. LGPL
http://www.opencascade.org/ Open CASCADE is a powerful CAD/CAM/CAE kernel and development platform for 3D modeling applications - LGPL-like - [ [[http://www.opencascade.org/showroom/screenshots/ screenshots]] ]
http://home.fnal.gov/~gnedin/IFRIT/ Public Domain powerful tool that can be used to visualize 3-dimensional data sets - [ [[http://home.fnal.gov/~gnedin/IFRIT/intro_shots.html screenshots]] ]
http://www.ncnr.nist.gov/xtal/software/gsas.html BSD-like GSAS (General Structure Analysis System) is a comprehensive system for the refinement of structural models to both x-ray and neutron diffraction data. The GSAS package can be used with both single-crystal and powder diffraction data (Rietveld analysis)


Revision [197]

Edited on 2006-04-05 13:41:41 by BenoitAudouard [add FullProf]
Additions:
http://techer.pascal.free.fr/postgis/ [fr] geographic information systems (postgres with spatial options)
===List of existing packages===
===Programs with packages available===
Those programs could be included either in main or in contrib, only need a maintainer and adaptation of spec file
http://calculix.de/ Three-Dimensional Structural Finite Element Program (GPL) TestCalculix
===Programs not yet packaged===
Have a look at those programs, check license and whether packages (deb, rpm, ...) would be available
===software that seems not free===
to be looked at later...
Deletions:
===list of existing packages===
===programs not yet packaged===
have a look at
http://calculix.de/ Three-Dimensional Structural Finite Element Program (GPL)


Revision [196]

Edited on 2006-04-05 02:57:55 by BenoitAudouard [add FullProf]
Additions:
http://gersoo.free.fr/calsci/calsci1.html [fr] long list of products (either free software or sometimes not)
http://consult.cern.ch/writeup/garfield/files/ (no license found) Garfield is a computer program for the detailed simulation of two- and three-dimensional drift chambers.
http://femm.foster-miller.net/index.html A Windows finite element solver for 2D and axisymmetric magnetic and electrostatic problems with graphical pre- and post-processors.
http://femm.foster-miller.net/Archives/license.htm not a free license (cannot charge)
http://femm.foster-miller.net/Archives/linux/readme.htm runs in wine :-(
for programs that have not yet been packaged and that I try to get compiled see CompilePrograms
Deletions:
for programs that have not yet been packaged and that I try to get compiled


Revision [195]

Edited on 2006-04-05 01:15:06 by BenoitAudouard [add FullProf]
Additions:
http://jsynoptic.sourceforge.net/ (LGPL) JSynoptic renders information graphically. It can be used as a simple graph plotter, or as a complex run-time monitoring environment
http://jsynoptic.sourceforge.net/screenshots.html
http://sourceforge.net/projects/jsynoptic/ Java
http://jcae.sourceforge.net/ (LGPL) # simple volumes modeler # finite elements mesher # portable on platforms which support Java and Opencascade
http://jcae.sourceforge.net/screenshots.html
http://www.sourceforge.net/projects/jcae Java
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=232&catid=2 [en] many suggestions of programs, being sorted CAELinuxSuggestions
Deletions:
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=232&catid=2 [en] many suggestions of programs


Revision [185]

Edited on 2006-04-03 16:26:16 by BenoitAudouard [add FullProf]
Additions:
http://www.aiaa-houston.org/newsletter/jan06/jan06.pdf [en] review of astronautics with octave, maxima, flight gear, ""IT++"", ode, openscenegraph
Deletions:
http://www.aiaa-houston.org/newsletter/jan06/jan06.pdf [en] review of astronautics with octave, maxima, flight gear, IT++, ode, openscenegraph


Revision [184]

Edited on 2006-04-03 15:44:00 by BenoitAudouard [add FullProf]
Additions:
===presentation of products===
http://www.aiaa-houston.org/newsletter/jan06/jan06.pdf [en] review of astronautics with octave, maxima, flight gear, IT++, ode, openscenegraph


Revision [178]

Edited on 2006-04-01 00:49:50 by BenoitAudouard [add FullProf]
Additions:
http://www.ncnr.nist.gov/programs/crystallography/software/expgui/expgui.html Public Domain tcl/tk EXPGUI is a GUI for GSAS
http://www.caelinux.com/CMS/index.php?option=com_simpleboard&Itemid=43&func=view&id=232&catid=2 [en] many suggestions of programs
Deletions:
http://www.ncnr.nist.gov/programs/crystallography/software/expgui/expgui.html Public Domain tcl/tk GUI for GSAS


Revision [174]

Edited on 2006-03-30 00:08:07 by BenoitAudouard [add FullProf]
Additions:
http://www.ncnr.nist.gov/xtal/software/gsas.html BSD-like GSAS (General Structure Analysis System) is a comprehensive system for the refinement of structural models to both x-ray and neutron diffraction data. The GSAS package can be used with both single-crystal and powder diffraction data (Rietveld analysis)
http://www.ncnr.nist.gov/programs/crystallography/software/expgui/expgui.html Public Domain tcl/tk GUI for GSAS


Revision [165]

Edited on 2006-03-27 01:52:32 by BenoitAudouard [add FullProf]
Additions:
http://home.fnal.gov/~gnedin/IFRIT/ Public Domain powerful tool that can be used to visualize 3-dimensional data sets - [ [[http://home.fnal.gov/~gnedin/IFRIT/intro_shots.html screenshots]] ]


Revision [164]

Edited on 2006-03-26 03:00:03 by BenoitAudouard [add FullProf]
Additions:
http://www.jesuislibre.org/applications/Scientifique_et_Technique/ [fr] many programs to verify


Revision [155]

Edited on 2006-03-20 12:10:39 by BenoitAudouard [add FullProf]
Additions:
http://gfs.sourceforge.net/ - [ [[http://gfs.sourceforge.net/gallery.html screenshots]] ] GPL library for the solution of the partial differential equations describing fluid flow
Deletions:
http://gfs.sourceforge.net/ - [[http://gfs.sourceforge.net/gallery.html screenshots]] GPL library for the solution of the partial differential equations describing fluid flow


Revision [154]

Edited on 2006-03-20 12:08:39 by BenoitAudouard [add FullProf]
Additions:
http://www.opencfd.co.uk/ computational fluid dynamics (CFD) Open FOAM (Open Field Operation and Manipulation) CFD Toolbox can simulate anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics, electromagnetics and the pricing of financial options
http://freshmeat.net/projects/openfoam/ license : GPL
http://gfs.sourceforge.net/ - [[http://gfs.sourceforge.net/gallery.html screenshots]] GPL library for the solution of the partial differential equations describing fluid flow


Revision [143]

Edited on 2006-03-19 23:22:33 by BenoitAudouard [add FullProf]
Additions:
TestScilab non-free license (non-commercial) tool for many scientific problems


Revision [142]

Edited on 2006-03-19 04:48:29 by BenoitAudouard [add FullProf]
Additions:
http://sw-tools.pdb.org/apps/MAXIT/index.html maxit Program Suite was developed by the PDB (Protein Data Bank) and NDB (Nucleic Acid Database) to assist in the processing and curation of macromolecular structure data


Revision [141]

Edited on 2006-03-19 04:28:15 by BenoitAudouard [add FullProf]
Additions:
===list of existing packages===
http://www.biolinux.org/soft.html rpm packages for biology => verify whether they are in plf or contrib
Deletions:
===list of existing packages in distributions===


Revision [140]

Edited on 2006-03-19 04:05:13 by BenoitAudouard [add FullProf]
Additions:
http://www.csc.fi/suomi/hakemisto/sovelluslista/ohjelmistot.html.en [en] Application software and databases at CSC (check what is free)


Revision [122]

Edited on 2006-03-13 02:41:03 by BenoitAudouard [add FullProf]
Additions:
http://www.wings3d.com/index.php [en] Wings 3D is a subdivision modeler BSD, developed in erlang :-(


Revision [117]

Edited on 2006-03-13 01:50:32 by BenoitAudouard [add FullProf]
Additions:
CompileElmer GPL tool using finite element method for multi-physics problems (compiles with g95 fortran ""gcc-c++"" ...)
Deletions:
CompileElmer GPL tool using finite element method for multi-physics problems (compiles with g95 fortran gcc-c++ ...)


Revision [116]

Edited on 2006-03-13 01:50:10 by BenoitAudouard [add FullProf]
Additions:
TestCalculix GPL tool


Revision [115]

Edited on 2006-03-11 04:17:20 by BenoitAudouard [add netgen ngsolve opencascade]
Additions:
http://www.hpfem.jku.at/netgen/index.html Netgen is an automatic 3d tetrahedral mesh generator - LGPL - [ [[http://www.hpfem.jku.at/netgen/index.html?/netgen/screenshots.html screenshots]] ]
http://www.hpfem.jku.at/ngsolve/index.html NGSolve is a general purpose 3D finite element solver. Version 1.x supports scalar (heat flow), elasticity and magnetic field problems. LGPL
http://www.opencascade.org/ Open CASCADE is a powerful CAD/CAM/CAE kernel and development platform for 3D modeling applications - LGPL-like - [ [[http://www.opencascade.org/showroom/screenshots/ screenshots]] ]


Revision [114]

Edited on 2006-03-10 02:34:10 by BenoitAudouard [add netgen ngsolve opencascade]
Additions:
To be sorted : http://wiki.eagle-usb.org/wakka.php?wiki=LogicielsScientifiques existing packages are described (I miss the snapshots)


Revision [112]

Edited on 2006-03-09 17:53:33 by BenoitAudouard [add netgen ngsolve opencascade]
Additions:
http://luke.no-ip.org/code/kueye/
http://rpms.mandrivaclub.com/rpms/Groups.html see http://rpms.mandrivaclub.com/rpms/Sciences_Mathematics.html and others in Sciences/you name it...
http://www.dhondt.de/ to download calculix
http://www.colorfullife.com/~manfred/ccx/ rpm are available
Deletions:
http://luke.no-ip.org/code/kueye/
http://rpms.mandrivaclub.com/rpms/Groups.html see http://rpms.mandrivaclub.com/rpms/Sciences_Mathematics.html and others in Sciences/you name it...
http://www.dhondt.de/ to download calculix
http://www.colorfullife.com/~manfred/ccx/ rpm are available


Revision [111]

Edited on 2006-03-09 17:49:30 by BenoitAudouard [add netgen ngsolve opencascade]
Additions:
http://www.dhondt.de/ to download calculix
http://www.colorfullife.com/~manfred/ccx/ rpm are available


Revision [110]

Edited on 2006-03-09 17:45:13 by BenoitAudouard [add calculix]
Additions:
http://www.geuz.org/getdp/ ""GetDP"" has been initially developed in the field of computational electromagnetics, general finite element solver using mixed elements to discretize de Rham-type complexes in one, two and three dimensions (GPL)
http://www.geuz.org/gmsh/ Gmsh is a three-dimensional finite element mesh generator with built-in pre- and post-processing facilities (GPL)
http://calculix.de/ Three-Dimensional Structural Finite Element Program (GPL)
Deletions:
http://www.geuz.org/getdp/ ""GetDP"" has been initially developed in the field of computational electromagnetics, general finite element solver using mixed elements to discretize de Rham-type complexes in one, two and three dimensions
http://www.geuz.org/gmsh/ Gmsh is a three-dimensional finite element mesh generator with built-in pre- and post-processing facilities


Revision [109]

Edited on 2006-03-09 17:35:35 by BenoitAudouard [add GetDP & Gmsh]
Additions:
http://www.geuz.org/getdp/ ""GetDP"" has been initially developed in the field of computational electromagnetics, general finite element solver using mixed elements to discretize de Rham-type complexes in one, two and three dimensions
http://www.geuz.org/gmsh/ Gmsh is a three-dimensional finite element mesh generator with built-in pre- and post-processing facilities
Deletions:
http://www.geuz.org/getdp/ ""GetDP"" has been initially developed in the field of computational electromagnetics


Revision [108]

Edited on 2006-03-09 17:33:16 by BenoitAudouard [add GetDP & Gmsh]
Additions:
http://www.geuz.org/getdp/ ""GetDP"" has been initially developed in the field of computational electromagnetics


Revision [94]

Edited on 2006-03-06 12:33:24 by BenoitAudouard [add skycharts]
Additions:
http://www.ap-i.net/skychart/modules.php?op=modload&name=PagEd&file=index&page_id=18 [fr] cartes du ciel (skychart), compiles with lazarus free pascal


Revision [84]

Edited on 2006-03-01 03:21:00 by BenoitAudouard [add skycharts]
Additions:
http://luke.no-ip.org/code/kueye/


Revision [82]

Edited on 2006-02-26 18:18:47 by BenoitAudouard [add skycharts]
Additions:
http://luke.no-ip.org/code/ [en] many programs, some about fractals or open GL...


Revision [81]

Edited on 2006-02-26 15:16:33 by BenoitAudouard [add skycharts]
Additions:
http://freshmeat.net/projects/aisee/ Free for non-commercial use graph browser which supports 15 layout algorithms, recursive graph nesting and easy printing
http://freshmeat.net/projects/siptoolbox/ scigraphica
http://g3d-cpp.sourceforge.net/ commercial-grade 3D Engine available as Open Source (BSD License). It is used in games, tech demos, research papers, military simulators, and university courses. It can support real-time rendering, off-line rendering, back-end game server management of 3D worlds, and use of graphics hardware for general purpose computing.
http://freshmeat.net/browse/97/
http://freshmeat.net/projects/ghemical/ A molecular modelling package with GUI and 3D-visualization tools.
http://freshmeat.net/projects/gmsh/ A 3D finite element mesh generator with built-in CAD engine and post-processor.
http://freshmeat.net/projects/visit/ Software for scientific visualization and analysis.


Revision [80]

Edited on 2006-02-26 03:25:57 by BenoitAudouard [add skycharts]
Additions:
http://www.librecours.org/cgi-bin/main?callback=presentation [fr]
https://lipforge.ens-lyon.fr/softwaremap/trove_list.php
http://gforge.inria.fr/softwaremap/trove_list.php
http://spike.sandia.gov/Trilinos/about.html Project Trilinos effort to develop and implement robust parallel algorithms using modern object-oriented software design, while still leveraging the value of established numerical libraries such as PETSc, Aztec, the BLAS and LAPACK.
Deletions:
Project Trilinos
http://spike.sandia.gov/Trilinos/about.html effort to develop and implement robust parallel algorithms using modern object-oriented software design, while still leveraging the value of established numerical libraries such as PETSc, Aztec, the BLAS and LAPACK.


Revision [79]

Edited on 2006-02-26 03:07:06 by BenoitAudouard [add skycharts]
Additions:
===programs not yet packaged===
have a look at
http://www.mit.edu/~ibaran/kseg.html [en] GPL Geometry
http://www.stat.umn.edu/macanova/macanova.home.html [en] GPL interactive statistical analysis program
http://socnetv.sourceforge.net/ [en] GPL comprehensive Social Networks Analysis and Visualisation
http://eye.jimbomania.com/eyefract.html [en] maybe-GPL
http://jimbomania.com/glfract.html [en] GPL loads fractal {Mandelbrot, Julia} sets from file as specified by David Eyerman's Eyefract v0.6.0 and displays them in 3D space with ""OpenGL/Glut""
for programs that have not yet been packaged and that I try to get compiled
CompileElmer GPL tool using finite element method for multi-physics problems (compiles with g95 fortran gcc-c++ ...)
Deletions:
CompileElmer tool using finite element method for multi-physics problems (compiles with g95 fortran gcc-c++ ...)


Revision [78]

Edited on 2006-02-24 23:35:54 by BenoitAudouard [add rpm]
Additions:
http://club.mandriva.com/xwiki/bin/KB/SciApps
http://rpms.mandrivaclub.com/rpms/Groups.html see http://rpms.mandrivaclub.com/rpms/Sciences_Mathematics.html and others in Sciences/you name it...


Revision [77]

Edited on 2006-02-24 20:51:30 by BenoitAudouard [add existing packages in ubuntu]
Additions:
===list of existing packages in distributions===
http://packages.ubuntu.com/breezy/math/


Revision [75]

Edited on 2006-02-18 17:15:29 by BenoitAudouard [add CompileElmer]
Additions:
===Compilations of programs===
CompileElmer tool using finite element method for multi-physics problems (compiles with g95 fortran gcc-c++ ...)


Revision [64]

The oldest known version of this page was created on 2006-02-15 01:25:40 by BenoitAudouard [add CompileElmer]
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